-
Judy.K.Henderson authored
Squashed commit of the following: commit 073e5f64 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Apr 9 16:44:14 2020 +0000 modified: arch.sh add external reference to VFRARCH. commit 53c818ba Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Apr 9 16:30:04 2020 +0000 modified: arch.sh to clean old data under vrfyarch and touch remaining data to prevent them from being removed by the operation system commit 44dd4c28 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Apr 9 12:00:15 2020 +0000 Issue #1: update selection of global_convinfo.txt and prepobs_errtable.global to be consistent with GFS v15.2.11 commit a8b655c0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Apr 9 02:50:32 2020 +0000 modified: module_base.hera and module_base.wcoss_dell_p3 to point to esmf/8.0.1bs08 commit 4c1acf26 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Apr 9 02:18:43 2020 +0000 modified: checkout.sh to point to model tag GFS.v16.0.2, which includes following updates https://github.com/ufs-community/ufs-weather-model/pull/100 * in FV3: code changes to improve atm fcst->wrt data transfer and fix iau restart files * in NEMS: Code changes are added to reduce the atm->wav coupling time and to turn off flush for esmf print in MAIN_NEMS.F90 * When print_esmf is .true., set Verbosity = high and HierarchyProtocol = off in atm-wav nems.configure (print_esmf can be off in model_confgiure at run time). * update esmf lib to esmf801bs08. commit 41b68b5b Merge: 556614f5 ad9dd289 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Tue Apr 7 00:15:44 2020 -0400 Merge pull request #51 from ajhenrique/bugfix/gfsv16b_sbspost Wave component workflow updates commit ad9dd289 Merge: 3b135fe9 556614f5 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Mon Apr 6 00:01:32 2020 +0000 Merging changes in gfsv16b: pointing to junwang:ufs-weather-model:esmf8.0.1 commit 3b135fe9 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Sun Apr 5 23:54:36 2020 +0000 Adding ROTDIR path for operationalnco envir commit 556614f5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Apr 4 00:40:20 2020 +0000 modified: sorc/checkout.sh to check out model branch checkout gfsv16_chsp which contains physics updates (czil, background diffusitivity and mixing length over stable boundary layer, and canopy heat storage) for reducing surface cold biases. modified: parm/config/config.fcst, tunn on canopy heat storage for slm=1. commit 83c546b7 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 18:55:08 2020 +0000 Adding back input file setting in global config.wave script. Changing print_esmf to .false. to supress verbosity in esmf library calls commit 551ae13f Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:52:01 2020 +0000 Added RUN_ENVIR variable to wave j-jobs. Removed wavelog from wave scripts, now using only jlogfile commit 6c803647 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:39:34 2020 +0000 Updated KEEPDATA block and added exit 0 to wave j-jobs commit 42e08a50 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:34:38 2020 +0000 Updated wavempexec and wave_mpmp to point to variables launcher and mpmp defined in env files commit ddb1b953 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:33:12 2020 +0000 Updated wavempexec and wave_mpmp to point to variables launcher and mpmp defined in env files commit 6c272f9e Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 15:06:29 2020 +0000 Unified calls to EXECwave and EXECcode. Removed legacy ush/wave_* scripts. commit 6e1e023b Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 13:26:18 2020 +0000 emoved commented out parameter definitions (legacy) from config files. Moved variables/parms specific to single wave steps out of general config.wave file. commit d5d3701e Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Apr 3 13:25:54 2020 +0000 emoved commented out parameter definitions (legacy) from config files. Moved variables/parms specific to single wave steps out of general config.wave file. commit 84c87300 Merge: 8ef7dee8 49faf67f Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Apr 2 19:57:12 2020 +0000 Merge remote-tracking branch 'gfsv16b/feature/gfsv16b' into bugfix/gfsv16b_sbspost commit 8ef7dee8 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Apr 2 19:54:07 2020 +0000 Adding idx file for subgrid grib2 files. Redirecting subgrid grib2 source to new native wave grid gnh_10m. Correcting bug on timing of second restart file stream on gdasfcst runs commit 4355153d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Apr 1 19:44:37 2020 +0000 adding hooks and parms for new wave model grids in several scripts. commit 49faf67f Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Mon Mar 30 14:32:42 2020 +0000 GitHub Issue #1 updated AWIPS parm cards with DZDT commit 84c28812 Merge: 7470bfe4 0e0dc873 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Mar 27 18:50:36 2020 +0000 Issue #1: Merge branch 'develop' at 0e0dc873 into feature/gfsv16b commit 7470bfe4 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Mar 27 18:34:52 2020 +0000 Issue #1: maintenance and consistency updates * modulefiles/module_base.wcoss_dell_p3 - change prod_envir from version 1.0.2 to 1.1.0 * scripts/exglobal_fcst_nemsfv3gfs.sh - add PREFIX_ATMINC for EnKF. PREFIX_ATMINC defaults to a blank string - no change in current behavior * ush/hpssarch_gen.sh - add ensemble mean sfcfXXX to enkf tarball commit 79b91dc2 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Mar 27 04:46:51 2020 +0000 Adding missing cd fv3gfs.fd back in checkout.sh commit 0e0dc873 Merge: b133700a 95a63432 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 10:54:44 2020 -0400 Merge pull request #42 from NOAA-EMC/hotfix/viewer Issue #41 - Update PRODUTIL paths for WCOSS in viewer commit 95a63432 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 14:43:44 2020 +0000 Issue #41 - Update PRODUTIL paths for WCOSS in viewer commit b133700a Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 13:01:38 2020 +0000 Issue #21 - correct syntax for machine if-blocks in setup_expt scripts commit c3fbe797 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Mar 26 12:05:46 2020 +0000 Adding new grids, changes to modulefiles for poiting to new esmf module commit f4ee5098 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 20:52:49 2020 +0000 Issue #21 - remove unneeded logic from partition check commit 4acc80f6 Merge: accb6f4b fb1c79f4 Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com> Date: Wed Mar 25 15:22:51 2020 -0400 Merge pull request #40 from NOAA-EMC/port2wcoss3p5 Issue #21 - Add support for WCOSS phase 3.5 commit fb1c79f4 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 16:06:54 2020 +0000 Issue #21 - updated WCOSS phase 3.5 queues commit 08a53549 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 14:58:14 2020 +0000 Issue #21 - add phase 3.5 support - add partition option to setup scripts - remove machine if-blocks from config.base and add variable population to setup_expt*py scripts - add phase 3.5 ppn value to WCOSS_DELL_P3 env and config.resources files commit be21d3f2 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Mar 24 20:10:07 2020 +0000 Poiting exec to new location of ww3 executables (HOMEgfs/exec). Adding new NH 1/6, SH 1/4 deg grids for testing commit c4cc28b0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Mar 24 17:22:55 2020 +0000 Fix wave config begin and end echos commit 20d79d27 Merge: 3efe1c23 accb6f4b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Mar 23 18:19:08 2020 +0000 Issue #1: Merge branch 'develop' accb6f4b into feature/gfsv16b commit accb6f4b Merge: 057b2a82 8b51b56f Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Mar 23 14:01:30 2020 -0400 Merge pull request #39 from NOAA-EMC/feature/verif-tag Issue #38 - update EMC_verif-global pointer from VLab to GitHub commit 8b51b56f Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 23 17:40:18 2020 +0000 Issue #38 - update EMC_verif-global pointer from VLab to GitHub commit 3efe1c23 Author: Fanglin Yang <Fanglin.Yang@noaa.gov> Date: Sun Mar 22 16:49:40 2020 +0000 update arch.sh to remove selected RESTART files commit 586d0994 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 19 14:01:16 2020 +0000 Issue #1 - update EMC_verif-global to tag verif_global_v1.6.0 in Externals.cfg commit f412f2ca Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 19 13:53:34 2020 +0000 Issue #1: update EMC_verif-global to tag verif_global_v1.6.0 commit 94abe6a1 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 18 19:02:09 2020 +0000 Fix syntax error in setup_workflow_fcstonly.py commit 06ff92be Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:10:37 2020 +0000 modify job card for tests commit a2b76f1d Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:10:04 2020 +0000 modify namsnd TIMSTN commit 81bc3fc4 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:09:24 2020 +0000 modify collectives mpmd design commit 9cbf9be8 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Tue Mar 17 18:08:41 2020 +0000 modify config.resources for postsnd number of tasks commit e3945e03 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Mar 16 10:38:07 2020 +0000 Issue #1: add logic to check WAVE_CDUMP prior to setting npe_fcst_gfs commit 6fdc6365 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Mar 16 10:35:14 2020 +0000 Issue #1: DA workflow updates for GFS v16 (does not change results) commit c728925a Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sun Mar 15 17:16:56 2020 +0000 Changes to test IOSTYP=3 and correct restart lines on ww3_multi.inp for rexcluding WW3 restarts. commit 9bc784f7 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sat Mar 14 17:43:00 2020 +0000 Changes to allow GFS fcsr cycle to have WW3 restart specs different to GDAS fcst (eg, turn off or on for GFS) commit 91610f80 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Mar 11 17:25:36 2020 +0000 Issue #1: update Externals.cfg to GFS v16 components commit 7dcf2328 Merge: 55130516 057b2a82 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Mar 11 17:21:33 2020 +0000 Issue #1: Merge branch 'develop' at 057b2a82 into feature/gfsv16b commit 057b2a82 Merge: 0377d20f 622167d5 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 11 12:00:58 2020 -0400 Merge pull request #29 from NOAA-EMC/feature/manage_externals Issue #3 - Introduce manage_externals as replacement for checkout.sh commit 50649e27 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Mar 11 03:16:10 2020 +0000 General cleanup for reducing size of wavepostsbs RUNDIR and improve runtime. Reorganized parameters in postsbs to provide more clarity and upfront control and the config.wave level commit 55130516 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 9 13:59:44 2020 +0000 Add ability to have wave jobs depending on cdump commit 622167d5 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 18:20:31 2020 +0000 Issue #3 - added explicit config flag example for checkout_externals in README and blurb about this replacing checkout.sh commit e83b90d5 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 17:00:15 2020 +0000 Issue #3 - remove prod_util and grib_util sections from build_all.sh, removed elsewhere already commit 8699b46a Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:30:54 2020 +0000 Issue #3 - updated README with new manic version commit e602cd3d Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:27:57 2020 +0000 Issue #3 - updated link_fv3gfs.sh to adjust wafs links commit 830c73f4 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:21:45 2020 +0000 Issue #3 - update EMC_verif-global tag in Externals.cfg after sync with develop commit 40084e67 Merge: f662fffa 0377d20f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:18:52 2020 +0000 Issue #3 - Merge branch 'develop' into feature/manage_externals commit cfa5be4b Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 14:05:29 2020 +0000 Issue #1 - remove gfswave restart archival commit 85b3a1d2 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 18:51:22 2020 +0000 Issue #1: update postsnd section of config.resources commit 6c8dc929 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 18:40:38 2020 +0000 Issue #1: update config files to be consistent with settings in pre-implementation GFS v16 real-time and retrospective parallels * parm/config/config.anal - reduce second outer loop iteration count for gfs * parm/config/config.epos - add ENKF_SPREAD to toggle on/YES or off/NO generation of ensemble spread files * parm/config/config.fcst - set adjust_dry_mass for GDAS (true) and GFS (false) * parm/config/config.fv3 - remove nth_efcs, set C384 nth_fv3=1 * parm/config/config.resources - set nth_efcs to nth_fv3 (default 2) commit a107109d Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 16:08:23 2020 +0000 Fixed bug in config.fcst related to extra then commit 0de559a0 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 15:55:50 2020 +0000 Issue #1: update exglobal_fcst_nemsfv3gfs.sh and checkout.sh * scripts/exglobal_fcst_nemsfv3gfs.sh - turn on adjust_dry_mass with dry_mass=98320.0, turn off iau_drymassfixer * sorc/checkout.sh - update to model tag GFS.v16.0.1 commit ce23e527 Merge: fa7bca5a 0377d20f Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Mar 5 15:36:50 2020 +0000 Issue #1: Merge branch 'develop' at 0377d20f into feature/gfsv16b commit 0377d20f Merge: 1b359dbe 25524675 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 08:43:16 2020 -0500 Merge pull request #28 from NOAA-EMC/feature/metplus2 Issue #8 - add switch for MET+ jobs commit 25524675 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 13:31:02 2020 +0000 Issue #8 - add switch for MET+ jobs commit fa7bca5a Merge: af73a39f cd67f975 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 08:08:57 2020 -0500 Merge pull request #25 from NOAA-EMC/feature/wave2global Feature/wave2global into feature/gfsv16b commit cd67f975 Merge: c72d7b5b af73a39f Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 13:03:10 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit c72d7b5b Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Wed Mar 4 23:53:41 2020 -0500 Clean up exwave_post_sbs commit 2e738f20 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Mar 5 04:03:44 2020 +0000 Moving standalone fv3 model_config exglobal_fcst block into if/else/fi cplwav model_config block. Reinstating config.wave block in JGLOBAL_FORECAST. Pointing EXECwave to HOMEgfs/exec directory for WW3 util executables (changed link_fv3gfs.sh accordingly). Removing debug options from compile.sh line in build_fv3.sh. commit b7638436 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 21:02:04 2020 +0000 Fix to JWAVE_PREP to look back a day for rtofs commit 33cf0fc0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 19:59:56 2020 +0000 Adjustments after going through PR review commit 1b359dbe Merge: 0359d342 31bb7d32 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 10:19:36 2020 -0500 Merge pull request #26 from NOAA-EMC/feature/metplus Feature/metplus - refactored MET+ jobs to resolve timing issues commit 5c8fa3dd Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 13:03:12 2020 +0000 Adjust restart_interval if-blocks for DOIAU=YES in configs commit 2b337a8f Merge: a4daafee e0a1a0ae Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Mar 3 18:31:09 2020 +0000 Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global commit a4daafee Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Mar 3 18:30:58 2020 +0000 Adjustment to waveprep resources to match numbger of rtofs files, bugfix on generation of ascii spectral data commit af73a39f Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Mar 3 13:44:59 2020 +0000 Github Issue #1 Updated postsnd.sh commit e0a1a0ae Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 2 18:45:50 2020 +0000 Fix gdasfcst dep on gldas commit 817f8faa Merge: 48ed4c5f 203d1747 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 2 13:41:13 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit 48ed4c5f Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Mar 2 04:22:02 2020 +0000 General cleanup. wavepostsbs wall time limit matches gfsfcst walltime . commit 4af83a43 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sun Mar 1 02:51:02 2020 +0000 Cleaning up prior to merging to gfsv16b commit 14f52dd3 Merge: 4400d7c3 d39ba74d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sat Feb 29 18:23:17 2020 +0000 Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global commit 4400d7c3 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sat Feb 29 18:23:13 2020 +0000 Changes to feal with waveprep and wavepost commit 203d1747 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Sat Feb 29 01:17:57 2020 +0000 Issue #1: two GFS v16 DA updates * sorc/checkout.sh - check out ProdGSI tag gfsda.v16.0.0 * parm/config/config.anal - remove REALTIME=NO section since not needed commit d39ba74d Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 19:01:02 2020 +0000 Removed extra forward slashes in wave part of hpssarch_gen.sh commit 82889365 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 18:44:13 2020 +0000 Added waves to archival commit a8f4200d Merge: 9321bdc9 8997f2a2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 13:58:28 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit 9321bdc9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 28 13:39:34 2020 +0000 Cleanup and added adjustments to other env files commit 8997f2a2 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Feb 27 14:37:24 2020 +0000 Issue #1: check existence of EnKF spread file before adding to HPSS archive list commit 2d6620e9 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 27 13:45:39 2020 +0000 rm nemsio utility commit 0120cf57 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 27 13:40:45 2020 +0000 modify config.resources for postsnd ppn=4 commit 0891840f Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 27 13:32:07 2020 +0000 modify config.resources for postsnd ppn=4 commit 67e20de5 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 27 04:22:36 2020 +0000 Adding current smoothing flag to config.wave. Previous push alos contained changes to reflect improved wave model physics. commit 10164bda Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 27 03:47:36 2020 +0000 Adjustments to use gfs/gdas seaice file instead of omb file. Changes to intake rtofs 1hr files when available. commit 7145fd01 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 19:34:24 2020 +0000 Modify prep.sh to create rtofs symlink in ROTDIR if DO_WAVE=YES commit 5ac8c868 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 18:44:45 2020 +0000 Fix for missing nth_postsnd in config.resources commit 91456a9b Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Feb 26 15:52:32 2020 +0000 modified config.resources for bufrsnd commit 011a393c Merge: d01c3543 8806c9e4 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 26 13:50:49 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit d01c3543 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 13:48:26 2020 +0000 Updates to checkout.sh from feature/gfsv16b commit 8806c9e4 Merge: e87695c8 318d8b46 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Feb 26 13:45:13 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b Commit NetCDF parallel reading capability. commit 3b5d451a Merge: 88d8abda 318d8b46 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 26 13:43:52 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit e87695c8 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Feb 26 13:42:41 2020 +0000 reinstate nemsio utility files for namsio data format commit 318d8b46 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Feb 25 20:17:40 2020 +0000 Issue #1: add gldas and esfc to the list of log files to write to HPSS commit 6102b697 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:32:21 2020 +0000 Adding a parallel reading interface commit c0b9ddc5 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:31:19 2020 +0000 adding parallel reading interface commit 057b10cc Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:30:16 2020 +0000 Clean up un-used variable commit 25ac8f0a Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:28:59 2020 +0000 Modify to call parallel reading subroutine commit c1a25a5e Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:20:26 2020 +0000 parallelizing gfsbufr.f for reading NetCDF files commit b28020f0 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:17:32 2020 +0000 modify driver for parallel read test commit bce7d964 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 19:14:45 2020 +0000 modify postsnd resource for parallel read commit f8991241 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Feb 25 18:59:26 2020 +0000 remove testing jobs script JGFS_POSTSND_netcdf commit 88d8abda Merge: 33c65a19 9d6e8464 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Feb 25 17:49:29 2020 +0000 Sync merge with feature/gfsv16b commit 9d6e8464 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 25 04:45:44 2020 +0000 setup_workflow_fcstonly.py failed. Updated to get "reservation" from config.base. commit 36367563 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Feb 24 20:37:27 2020 +0000 Issue #1: update config files for use in GFS v16 real-time and retrospective parallels commit 33c65a19 Merge: 9a1f79d7 0aa8dacf Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Feb 24 15:37:48 2020 +0000 Bugfix for creating spectra files in wavepostsbs step commit 0aa8dacf Merge: 8148766c 431c7866 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 21 13:57:55 2020 +0000 Merge branch 'feature/gfsv16b' into feature/wave2global commit 8148766c Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 21 13:56:56 2020 +0000 Small fix to exglobal_fcst_nemsfv3gfs.sh commit 431c7866 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Feb 20 15:19:42 2020 +0000 Issue #1: remove RESERVATION from archive jobs commit ebf02b19 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Feb 20 14:05:52 2020 +0000 Remove output_1st_tstep_rst override and add iau_drymassfixer commit 36cb42dc Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 20 12:30:28 2020 +0000 Removing references to gens/gefs from exglobal_fcst_fcst_nemsfv3gfs.sh in preparation for merge back to gfsv16b commit 9a1f79d7 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Feb 20 12:19:11 2020 +0000 Adding back lost and found EOF in section that creates input.nml commit 635d95d5 Merge: f31de5aa c4454b3a Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 20:42:49 2020 +0000 Additional sync merge with feature/gfsv16b today commit f31de5aa Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 20:18:23 2020 +0000 Removing copies of exglobal_fcst that were added erroneously commit c4454b3a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Feb 19 16:41:38 2020 +0000 modified: sorc/checkout.sh to check out model tag GFS.v16.0.0, which contains updates of dry mass fixer, WW3 thread reproducibility and post/8.0.5 lib modified: scripts/exglobal_fcst_nemsfv3gfs.sh to add iau_drymassfixer = .true. commit 31bb7d32 Merge: eb73e520 0359d342 Author: Mallory Row <mallory.row@noaa.gov> Date: Wed Feb 19 15:24:42 2020 +0000 Merge branch 'develop' into feature/metplus commit e058a905 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 15:05:59 2020 +0000 Changes to config.resources after wave tests commit 24844e40 Merge: 0f2f2b0b c2e99795 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 14:03:58 2020 +0000 Sync merge with feature/gfsv16b commit 0f2f2b0b Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Feb 19 13:36:14 2020 +0000 Updates to config.wave and scripts/exwave_post_sbs.sh commit c2e99795 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Feb 19 00:42:49 2020 +0000 Issue #1: add backup option to fit2obs, update config files * jobs/rocoto/vrfy.sh - set verification date based on VBACKUP_FITS * parm/config/config.anal - correct ozinfo typo, enclose realtime settings in REALTIME block * parm/config/config.resources - set npe_node_post for WCOSS_DELL_P3, reduce C768 eobs npe_eobs * parm/config/config.vrfy - add VBACKUP_FITS commit ed160c03 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 18 22:22:10 2020 +0000 modified: sorc/checkout.sh to check out gldas release branch gldas_gfsv16_release.v1.0.0 commit c08ebb8a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 18 17:22:01 2020 +0000 modified: checkout.sh to use UPP: upp_gfsv16_release.v1.0.5 ufs-util: release/ops-gfsv16 commit a6bc7f8a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 18 17:12:17 2020 +0000 modified: arch.sh to archive gfs_pgrb2b group into HPSS commit 958ee38b Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 20:38:53 2020 +0000 Increasing resources for eupd when C384 commit db5c593f Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Feb 14 20:12:00 2020 +0000 Issue #1: update modulefiles/module_base.hera to crtm/2.3.0 commit f662fffa Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 15:57:05 2020 +0000 Issue #3 - Updated README with new manic tag v1.1.7 commit 94cd971f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 15:31:32 2020 +0000 Updates to wave scripts commit 4e006dc3 Merge: fcc5a74a a94a44a8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Feb 14 00:50:00 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit fcc5a74a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Feb 14 00:48:44 2020 +0000 modified: config.fcst to fix a bug commit e3196a84 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 13 15:59:06 2020 -0500 Update README.md commit e46b175d Merge: 4bd0e203 0359d342 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 13 20:38:04 2020 +0000 Issue #3 - sync merge with develop branch commit aec4c288 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 13 19:09:56 2020 +0000 Added EUPD_CYC variable to config.base.emc.dyn commit a94a44a8 Merge: 0f0894bf 0359d342 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Feb 13 18:59:51 2020 +0000 Issue #1: Merge branch 'develop' at 0359d342 into feature/gfsv16b commit 0359d342 Merge: 1d9a1f00 bd00cb98 Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com> Date: Thu Feb 13 09:53:59 2020 -0500 Merge pull request #19 from NOAA-EMC/feature/remove_theia Feature/remove theia commit 0f0894bf Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Thu Feb 13 14:15:16 2020 +0000 GitHub Issue #1 removed script exnawips.sh.ecf (not used) commit adabbaf9 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 13 00:34:02 2020 +0000 change netcdf modules commit 767b9c33 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 13 00:32:25 2020 +0000 remove hardwired libs commit be3c324d Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 13 00:31:13 2020 +0000 Modified modules for parallel_netcdf commit 3e3c119d Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Feb 13 00:29:53 2020 +0000 Added netcdf_parallel modules commit 0b25f5b6 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Feb 12 20:28:27 2020 +0000 Changes to be committed: deleted: ../driver/product/driver_WAFS.README deleted: ../scripts/exgfs_grib_wafs.sh.ecf deleted: mkwfsgbl.sh commit 2a2a8d3f Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 12 18:00:14 2020 +0000 Adjusting config.resources for C384 commit 8bdf2387 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 12 17:33:53 2020 +0000 Reducing npe_eobs from 400 to 100 commit 648479c0 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Feb 12 15:56:39 2020 +0000 Issue #1: add reservation keyword to rocoto workflow generator for WCOSS_DELL_P3 commit c48ac6df Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Feb 12 14:46:26 2020 +0000 Removing gefs from checkout.sh and link_fv3gfs.sh commit fc0b6242 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Feb 12 02:37:36 2020 +0000 modified: exglobal_fcst_nemsfv3gfs.sh -- bug fix commit 97e34f97 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 11 17:47:34 2020 +0000 removed the following obsolete lines from exglobal_fcst_nemsfv3gfs.sh JCAP_STP=${JCAP_STP:-$JCAP_CASE} LONB_STP=${LONB_STP:-$LONB_CASE} LATB_STP=${LATB_STP:-$LATB_CASE} commit 60098fc7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 11 17:34:40 2020 +0000 1. modified: parm/config/config.fcst to set lheatstrg=".false." for both NOAH-LSM and NOAH-MP per the decision made by the physics group. More development is required to use the canopy heat storage parameterization. 2. modified: scripts/exglobal_fcst_nemsfv3gfs.sh to 1) change the default of lheatstrg to ".false." 2) for ensemble forecast, change &nam_stochy ntrunc = $JCAP_STP lon_s = $LONB_STP lat_s = $LATB_STP EOF to &nam_stochy / EOF Phil Pegion noted: "If you are concerned about the ensemble runtime with stochastic physics on, I recommend removing ntrunc, lat_s, and lon_s from the namelist. I have fixed the bug that forced the spectral resolution of the random patterns to be related to the number of mpi tasks. Now the code calculates the appropriate truncation for a given length scale. It probably won't save a lot of time, but it is worth it. Scientifically, the patterns are the same. commit ababd08e Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Feb 11 16:28:12 2020 +0000 Updated data card grib2_awpgfs102.003 commit eef10607 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 11 16:14:29 2020 +0000 resort back to older w3emc lib since w3emc_para does not support mersenne_twister modified: modulefiles/gfs_bufr.hera modified: modulefiles/gfs_bufr.wcoss_dell_p3 commit 8fe97ac6 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 11 15:45:33 2020 +0000 modified: modulefiles/gfs_bufr.hera and modulefiles/gfs_bufr.wcoss_dell_p3 to load paralel netcdf modules commit 78a7294e Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 19:29:15 2020 +0000 Fixed missing fi in checkout.sh commit 15628bda Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 19:21:39 2020 +0000 Change fv3gfs checkout to develop branch of ufs-weather-model commit 631820be Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 19:08:30 2020 +0000 Changing checkout.sh to Henrique's fork branch gfsv16_wave commit cc742b67 Merge: ba63c4f8 1d9a1f00 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Feb 10 17:19:58 2020 +0000 Issue #1: Merge branch 'develop' at commit:1d9a1f00 into feature/gfsv16b commit a5184858 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 17:02:22 2020 +0000 Changing fv3gfs.fd checkout back to gfsv16_updates commit c75d35b6 Merge: 2a46ee2e ba63c4f8 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 16:44:53 2020 +0000 Sync merge with feature/gfsv16b commit 2a46ee2e Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Feb 10 15:42:35 2020 +0000 Updates for wave and fcst scripts, as well as config.wave commit ba63c4f8 Merge: fc2144e6 75a9fb5d Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Sat Feb 8 20:35:14 2020 -0500 Merge pull request #17 from NOAA-EMC/feature/gfsv16b_paranetcdf Feature/gfsv16b paranetcdf commit 75a9fb5d Merge: a2932c5b 6f256b4f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Feb 9 01:22:29 2020 +0000 Merge branch 'feature/gfsv16b_paranetcdf' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_paranetcdf commit a2932c5b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Feb 9 01:21:52 2020 +0000 modified: parm/config/config.base.emc.dyn modified: parm/config/config.base.nco.static commit 6f256b4f Author: Cory.R.Martin@noaa.gov <cory.r.martin@noaa.gov> Date: Fri Feb 7 20:07:24 2020 +0000 Added namelist option 'cld_amt' to enkf_chgres_recenter_ncio. Default is .false., when .true. will attempt to read in cld_amt and print error (but continue) if it is missing from input file commit eb068175 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Feb 7 16:20:43 2020 +0000 modified: sorc/checkout.sh update ufs_util repo commit b9feca17 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Feb 7 15:03:52 2020 +0000 modified: ../../modulefiles/module_base.hera modified: config.anal control ABI and AHI data usage modified: config.resources updates based on pull reviews modified: ../../sorc/gaussian_sfcanl.fd/makefile.sh use parallel netcdf commit eb73e520 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Feb 7 14:04:37 2020 +0000 Update EMC_verif-global checkout to verif_global_v1.5.0 commit bd00cb98 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Feb 7 13:41:05 2020 +0000 Issue #4 - bug fix in getic.sh for v15 commit 1c85197d Merge: 67dae409 1d9a1f00 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Feb 7 13:27:18 2020 +0000 Issue # 4 - Sync merge branch 'develop' into feature/remove_theia commit 1d9a1f00 Merge: 3ed9267b bdbecaa7 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Feb 7 08:11:21 2020 -0500 Merge pull request #18 from lgannoaa/exception_handling Exception handling commit 85deaf78 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Feb 6 19:16:18 2020 +0000 Updated resource configs based on C384 and C768 tests commit 4bd0e203 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 6 11:55:31 2020 -0500 Update README.md commit d9ea1aca Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 6 16:03:11 2020 +0000 Issue #3 - reduce hashes down to minimum 8 characters commit 92d07793 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Feb 6 15:28:15 2020 +0000 Update to use parallel netcdf libs modified: modulefiles/fv3gfs/enkf_chgres_recenter.wcoss_dell_p3 modified: modulefiles/fv3gfs/enkf_chgres_recenter_nc.hera modified: modulefiles/fv3gfs/enkf_chgres_recenter_nc.wcoss_dell_p3 modified: modulefiles/fv3gfs/gaussian_sfcanl.hera modified: modulefiles/fv3gfs/gaussian_sfcanl.wcoss_dell_p3 commit a6a28943 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Feb 6 15:10:40 2020 +0000 Point new UPP tag upp_gfsv16_release.v1.0.2, for upgrading with netcdf_parallel 4.7.4, hdf_parallel 1.10.6 and w3emc_para 2.4.0 on Dell and Hera commit cf1c0a5c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Feb 6 13:43:17 2020 +0000 Issue #16: Update EMC_verif-global to tag verif_global_v1.5.0 commit 41ca86bc Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Feb 6 04:19:11 2020 +0000 modified: parm/config/config.base.emc.dyn to point new obsproc_prep to spupport parallel netcdf commit 61b72ba0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Feb 6 01:10:06 2020 +0000 modified: config.resources commit 17bcdf2a Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Feb 4 19:11:42 2020 +0000 Wave changes for running with IAU on commit 3c0ebdde Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Feb 4 17:11:56 2020 +0000 modified: modulefiles/module_base.hera and modulefiles/module_base.wcoss_dell_p3 to point to parallel versions of netCDF libs and esmf lib modified: parm/config/config.efcs and parm/config/config.fcst to set chunksizes correctly for high-res and enkf forecasts commit f89bafe5 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Feb 3 14:09:33 2020 +0000 Issue #16: update DA checkout to feature/parallel_ncio commit bad2fc1a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Feb 3 05:01:43 2020 +0000 modified: parm/config/config.fcst modified: parm/config/config.fv3 commit 183aac6b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Feb 3 04:10:36 2020 +0000 Modified config.resources to use npe_node_max to define computing resouces. Pull over new settings found in the config files of in v16rt2. Made ertain adjustment and cleaned up certain parameters in a few scripts to remove redundance. modified: parm/config/config.anal modified: parm/config/config.base.emc.dyn modified: parm/config/config.efcs modified: parm/config/config.eobs modified: parm/config/config.eupd modified: parm/config/config.fcst modified: parm/config/config.fv3 modified: parm/config/config.gldas modified: parm/config/config.post modified: parm/config/config.resources commit 9d5e0a03 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Feb 2 19:04:59 2020 +0000 Github Issue #16 1. add options to workflow scripts to use parallel netcdf for I/O. The application varies with model resolution and computing platform. See config.fcst and exglobal_fcst_nemsfv3gfs.sh for the settings. 2. Update UPP to upp_gfsv16_release.v1.0.1 modified: modulefiles/module_base.hera modified: modulefiles/module_base.wcoss_dell_p3 modified: parm/config/config.fcst modified: scripts/exglobal_fcst_nemsfv3gfs.sh modified: sorc/checkout.sh deleted: parm/config/config.resources.C96 commit 3a667886 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Feb 2 05:17:40 2020 +0000 The following files are no longer used deleted: README.iau deleted: config.anal.iau deleted: config.base.emc.dyn.iau deleted: config.efcs.iau deleted: config.eobs.iau deleted: config.eupd.iau deleted: config.vrfy.iau commit fc2144e6 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:09:00 2020 +0000 issue #15 Remove station height adjustment commit 72cb9623 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:08:20 2020 +0000 issue #15 Porting bufrsnd to Hera commit 0799ecd1 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:08:02 2020 +0000 issue #15 Porting bufrsnd to Hera and remove height adjustment commit a0ac43a8 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:07:34 2020 +0000 issue #15 Porting bufrsnd to Hera and remove height adjustment commit 85dc2f24 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:04:28 2020 +0000 issue #15 Porting bufrsnd to Hera commit 26d52df7 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 16:03:20 2020 +0000 issue #15 Modofy driver for test runs commit 0e34bc5f Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 31 14:53:37 2020 +0000 port v16b bufrsnf to Hera commit 87d3d18c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jan 31 03:53:20 2020 +0000 modified parm/config/config.resources to apply more tasks to gldas aprun_gaussian commit 50b70215 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 30 14:55:48 2020 +0000 Resource adjustments and fix for restart copying in exglobal commit bdbecaa7 Author: Lin.Gan <lin.gan@noaa.gov> Date: Wed Jan 29 15:15:52 2020 +0000 Display exception handling message for individual package with location of the log file commit 85b254d8 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Jan 28 21:18:35 2020 +0000 Adjusting resources for wave component commit 3f858be3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 20:43:02 2020 +0000 Further adjustment to config.efcs for restart_interval for cold start SDATE commit a674d30c Merge: 9944f2fe 3fda3e35 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 20:26:10 2020 +0000 Merge branch 'feature/wave2global' of https://github.com/NOAA-EMC/global-workflow into feature/wave2global commit 9944f2fe Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 20:25:59 2020 +0000 Resource adjustments for C384, restart_interval adjustment for cold start, and fcst dependency update commit b64fd5ff Merge: cf008631 3ed9267b Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:24:37 2020 +0000 Merge branch 'develop' into feature/manage_externals commit cf008631 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:23:14 2020 +0000 Issue #3 - remove copy of manage_externals under util and add README.md file commit 3fda3e35 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Jan 28 14:18:47 2020 +0000 Adjusting output stride on station outputs, adding bulletin output to wavepostsbs using unified wave_outp_spec.sh (removing wave_outp_bull.sh), adjusting wave resources in config.fv3 commit e4bd7d09 Merge: 99b19f18 b3d88593 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 13:58:16 2020 +0000 Sync merge with feature/gfsv16b commit 99b19f18 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 13:54:46 2020 +0000 Disabling additional wave jobs for later implementation commit c12e8798 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Jan 27 19:38:19 2020 +0000 Implement exception handling in build_all script commit bfc7bb0b Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jan 27 19:06:17 2020 +0000 Issue #3 - initial add of manage_externals and needed Externals.cfg. Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds. commit b3d88593 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jan 27 17:54:31 2020 +0000 Issue #1: update gldas workflow dependency to improve parallel throughput commit e216205a Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Jan 27 00:01:14 2020 +0000 Updating resource config in config.fv3 for running cplwav in c384 with ppn=7,thrd=4; checkout.sh now points to the latest ufs-weather-model develop branch; updated fv3gfs_build.cfg to match ufs-weather-model commit 4db98e69 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Jan 24 17:18:14 2020 +0000 Issue #1 - update EMC_verif-global checkout to tag verif_global_v1.4.1 commit 4d5713d3 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jan 24 15:51:28 2020 +0000 Testing github commit commit 786806f3 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 15:04:16 2020 +0000 Missed file format updates in a few places in config.metp commit 7d0f783a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Jan 24 14:41:02 2020 +0000 Issue #1 - GFS v16 updates for MOS, checkout, and archive * scripts/run_gfsmos_master.sh.dell - update MOS script to point at MDL gfsmos * sorc/checkout.sh - check out new fv3gfs branch and UPP tag * ush/hpssarch_gen.sh - add loginc to gdas and gfs tarballs commit d0a3b53c Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jan 24 14:30:29 2020 +0000 init commit for exception handling branch commit c11dfef0 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 14:07:29 2020 +0000 Update EMC_verif-global tag to verif_global_v1.4.1 commit df2e6b0b Merge: bc07de02 09e68b48 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 23 20:00:34 2020 +0000 Sync merge with feature/gfsv16b commit bc07de02 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 23 19:43:12 2020 +0000 Fixed wavepostsbs dependencies commit 4b54c37b Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 23 15:04:20 2020 +0000 Turn off cplwav in efcs config and adjusted dependencies for fcst job commit 0ea809c2 Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jan 23 13:29:56 2020 +0000 Update file format variable in config.metp of online archive files commit b886c848 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 22 21:01:34 2020 +0000 Change to base config and update to wave dependencies commit 154b118a Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 22 03:37:24 2020 +0000 Changing WAV_MOD_ID to MDC (model component) tag; updating some paths for wave components in several scripts. Correcting wave_tar bug. commit 0edcb211 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Jan 21 20:15:14 2020 +0000 Several changes to change the sirectory name from to etc. Updates to wavepostsbs. commit c0d7179f Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:37:16 2020 +0000 Add updated env machine files for gfsmetp commit 82e69071 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:29:23 2020 +0000 Update config.resources for gfsmetp commit 72e8adf1 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:19:31 2020 +0000 Update EMC_verif-global tag checkout to 1.4.0 commit 6872f79f Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:14:25 2020 +0000 Add rocoto METplus job script commit 9c941566 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:09:13 2020 +0000 Changes to setup_workflow.py for gfsmetp metatask commit 09e68b48 Merge: a49e4e54 3ed9267b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jan 20 22:05:53 2020 +0000 GitHub Issue #1 Merge branch 'develop' at revision 3ed9267b into feature/gfsv16b commit 0ad85188 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jan 17 17:29:09 2020 +0000 ACCOUNT fix in config.base.emc.dyn and dependency fix to setup_workflow.py commit 80f13fb4 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Jan 17 03:29:35 2020 +0000 Removing underscore from COM wave directory names commit 39a9df93 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Jan 17 03:08:41 2020 +0000 Changing back waveprep to include ice and currents by default commit c36df4d7 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Jan 16 19:43:26 2020 +0000 Updating post sbs script to copy station files to correct directory. commit a49e4e54 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Thu Jan 16 14:59:08 2020 +0000 Added build script for gfs_util commit f1cd7ab4 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:48:11 2020 +0000 Adding block sourcing config files into wave j-jobs commit b736f831 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 15 20:40:16 2020 +0000 Removed config sourcing from rocoto job scripts commit 4f6840b2 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:38:41 2020 +0000 Removing dependency on log file for wave post sbs commit 429c4097 Merge: 3f685fd3 a6905174 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:35:24 2020 +0000 Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global commit 3f685fd3 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 20:29:58 2020 +0000 Reinstating Ratkos NO NO in build_fv3.sh commit 8f488449 Merge: 5eeaffa1 7c595189 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 20:12:52 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit a6905174 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 15 20:12:20 2020 +0000 Adding supplemental config source to JGLOBAL_FORECAST for wave commit 5eeaffa1 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 20:12:08 2020 +0000 Updated GFS drivers commit 7c595189 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Wed Jan 15 20:09:54 2020 +0000 Github Issue #1 updated JGFS_PGRB2_SPEC_GEMPAK commit 1f5c5937 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 19:59:27 2020 +0000 Removing KEEPDATA from JWAVE_POST_SBS commit 5d2f2a21 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Wed Jan 15 19:50:00 2020 +0000 Github Issue #1 modified rocoto gempak.sh commit baa06afc Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Jan 15 19:32:06 2020 +0000 Changes to update sbs post and reconciling parameters for output post data. commit 8d430cee Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 16:28:13 2020 +0000 GitHub Issue #1 Updated ush,gempak,jobs and docs commit 53f719f6 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 14:19:46 2020 +0000 GitHub Issues #1 Bugzilla ticket 889 fixed bug in rdbfmsua.f commit 8b94a2d6 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 14:15:16 2020 +0000 GitHub Issues #1 Updated some gfs driver commit ed2317a9 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 15 05:10:51 2020 +0000 Updated GFS driver commit 3ed9267b Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 14 19:32:36 2020 +0000 Issue #10 - mid-year update to bufr station list (develop) commit f59fc0c4 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Mon Jan 13 20:03:34 2020 +0000 GitHub Issue#1 Revert parm card for AWIPS grid 211 commit 21feab28 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Fri Jan 10 22:00:38 2020 +0000 GitHub Issue #1 Updated AWIPS grid 211 commit e292d960 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Fri Jan 10 21:12:36 2020 +0000 GitHub Issue Updated AWIPS parm card grid#211 commit fcf2d091 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:55:57 2020 +0000 modify gfs_bufr.sh for generalization commit 528cde19 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:55:05 2020 +0000 modify exgfs_postsnd.sh.ecf commit 0b5a056b Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:40:21 2020 +0000 Addd 25 bufr stations and all station j,i commit 349c2997 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:36:57 2020 +0000 add module nemsio/2.2.3 commit 3f78f6a9 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:35:06 2020 +0000 change gfsbufr.f makefile_module meteorg.f for either nemsio or netcdf commit ad40a443 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Jan 10 20:30:53 2020 +0000 added two interface subroutines for either netcdf or nemsio commit 1915aa92 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jan 10 18:36:32 2020 +0000 Issue #8 - pulled in config.metp and modifications to two setup scripts commit e6871dff Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Fri Jan 10 15:57:38 2020 +0000 Updated gempak/fix to add GOES 17 image files commit f4185149 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Fri Jan 10 10:36:23 2020 +0000 GitHub Issue#1 Removed util/fix and parm commit 07c1e8d8 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Thu Jan 9 15:12:28 2020 +0000 GitHub Issue #1 Removed FAX programs ../util/sorc commit 67dae409 Merge: f78eb1b4 091f4ba1 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 8 20:15:45 2020 +0000 Merge branch 'develop' into feature/remove_theia commit f78eb1b4 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 8 20:13:08 2020 +0000 Issue #4 - removed references to Theia and Theia scripts commit 091f4ba1 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 8 19:37:45 2020 +0000 Issue #7 - missed update to gdas transfer file from GFSv15.2.5 updates commit 32bb8f60 Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Jan 8 18:59:37 2020 +0000 feature/gfsv16b: Update to "env/HERA.env" - update computation of tasks used for parallel processing of GLDAS data according to Jesse's recent change to remove unused files. commit 465512fe Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Wed Jan 8 14:50:34 2020 +0000 GitHub Issue #1 Updated modulefiles and sorc commit d6184a02 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Tue Jan 7 22:36:05 2020 +0000 GitHub Issue #1 Updated ush and ecflow commit a45fad17 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Tue Jan 7 22:13:43 2020 +0000 GitHub Issue #1 Updated sorc and modulefiles commit 98fcd0da Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Jan 7 21:08:06 2020 +0000 GitHub Issue #1 Updated Release_Notes.gfs_downstream commit 9c384d1a Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Jan 7 21:00:58 2020 +0000 GitHub Issue #1 Updated GFS AWIPS parm cards commit 293f0f19 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Jan 7 19:56:06 2020 +0000 GitHub Issue #1 Updated GFS AWIPS parm cards commit 465d6294 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Jan 7 19:43:49 2020 +0000 GitHub Issue #1 Updated GFS v16.0 driver commit ead449d9 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Jan 7 15:21:05 2020 +0000 GitHub Issue #1 Updated gempak files commit e45a4a95 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Mon Jan 6 20:51:49 2020 +0000 GitHub Issue #1 Updated AWIPS_WMO_parm files commit 6b035ff7 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Mon Jan 6 19:06:29 2020 +0000 GitHub Issue #1 Removed GFS synthetic GOES 12/13 on global 1 deg commit ff9b3f11 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Mon Jan 6 16:48:13 2020 +0000 GitHub Issue #1 Removed bulletins jobs and scripts commit f11ecbc9 Author: George Gayno <George.Gayno@noaa.gov> Date: Mon Jan 6 15:59:57 2020 +0000 feature/gfsv16b: Update "env/HERA.env" for parallel processing of GLDAS data on Hera. commit 663a29f1 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Jan 3 21:40:51 2020 +0000 feature/gfsv16b branch: Updates for GLDAS to optimize data processing: Add variable APRUN_GLDAS_DATA_PROC to env/WCOSS_C.env to run data processing in parallel with cfp on Cray. commit 74e25778 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Jan 3 19:35:56 2020 +0000 feature/gfsv16b branch: Updates for GLDAS data processing optimization: (1) Delete JGDAS_GLDAS job and instead link the GLDAS repo version using 'link_fv3gfs.sh'; (2) Update 'link_fv3gfs.sh' to link new gldas script 'gldas_process_data.sh'; (3) Add environment variable - APRUN_GLDAS_DATA_PROC - to WCOSS_DELL_P3.env to run data processing with 'cfp' on Dell. commit 99069319 Merge: 71ee0e33 a43e4270 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Dec 29 22:50:32 2019 -0500 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 71ee0e33 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Dec 29 22:48:12 2019 -0500 further update arch.sh to remove gdas cycle old directories passing the gldas sflux file retention period commit a43e4270 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Dec 27 14:29:07 2019 +0000 Issue #1 - default OUTPUT_HISTORY to ".true." in ush/hpssarch_gen.sh commit 784fb65d Merge: 9562fc71 7440aad1 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Dec 27 05:01:12 2019 +0000 Merging latest feature/gfsv16b branch into wave2global commit 9562fc71 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Dec 27 04:47:20 2019 +0000 Adjusting resources and env for running C384 coupled commit 5ce0bdf0 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Dec 26 19:00:42 2019 +0000 Changes to support wave side by side post commit 7440aad1 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Dec 26 12:57:40 2019 +0000 Issue #1 - add or dependency on loganl.txt for ecmn metatask and esfc task commit 383a00df Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Dec 26 11:41:36 2019 +0000 Issue #1 - (1) load g2tmpl/1.6.0 in module_base.wcoss_dell.p3; (2) set DOSFCANL_ENKF in config.esfc commit c2296c69 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Dec 25 11:19:35 2019 -0500 Issue #1 - update arch.sh to save sfcanl for running gldas as ICs commit 68ab52f8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Dec 24 12:45:56 2019 -0500 modified jobs/rocoto/arch.sh to clean all but sflux grib2 files whithin the last 96 hours of forecast cycles and before RMOLDEND if DO_GLDAS=YES commit b1b9a7ee Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Dec 23 20:18:00 2019 -0500 modified setup_workflow.py -- update gdasfcst step dependency if gldas is turned on commit b4d90d97 Merge: 96c28da1 49af82c3 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Dec 22 14:29:13 2019 -0500 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 96c28da1 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Dec 22 14:27:11 2019 -0500 modified: modulefiles/module_base.hera modified: ush/hpssarch_gen.sh commit 07d9ec5a Author: Henrique Alves <henrique.alves@noaa.gov> Date: Sun Dec 22 17:55:13 2019 +0000 Temporary changes to work with updated WW3 code under GEFS_v12 and to bugfix wave_post_sbs. commit 49af82c3 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Dec 20 18:41:43 2019 +0000 Issue #1 - update handling of model restarts upon forecast completion in exglobal_fcst_nemsfv3gfs.sh commit a69df4b4 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Dec 20 12:58:02 2019 +0000 Additional changes to have wave init, prep, postsbs handed over for experiments by gfsv16 group commit 2d8499c9 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Dec 19 19:01:31 2019 +0000 Issue #1 - Fit2Obs changes (1) provide default defintion for CONVNETC (2) update WCOSS_DELL_P3 fitdir commit d50076fb Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Dec 19 18:45:47 2019 +0000 Issue #1 - (1) set RUN_ENVIR to OUTPUT_FILE for Fit2Obs, (2) change log file dependency for post000 job commit f6d5044b Merge: ead3c9b4 3fd4bcfa Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Dec 18 19:21:11 2019 +0000 Issue #1 - merge branch 'develop' at commit:3fd4bcfa into feature/gfsv16b commit 46aa4bae Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Dec 17 21:02:05 2019 +0000 Adding resource adjustments to allow fcst step to run the couple FV3-WW3 system. Adding the WAV_POST_SBS job, modifying waveprep to use new unified point output grid tag uoutpGRD commit 3fd4bcfa Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Dec 17 19:12:28 2019 +0000 GitHub Issue #2 - GFSv15.2.6 obsproc version update, earc bug fix, and tracker path update commit e7689530 Merge: 8441f9da ead3c9b4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Dec 16 21:56:37 2019 -0500 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit ead3c9b4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Dec 17 02:46:45 2019 +0000 recommit updated exglobal_fcst_nemsfv3gfs.sh commit 8441f9da Merge: 66a1f833 41208b38 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Dec 16 21:28:37 2019 -0500 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 41208b38 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Dec 17 01:51:47 2019 +0000 modified: exglobal_fcst_nemsfv3gfs.sh add postxconfig-NT_FH00.txt for inline post define rst_invt1 as the first element of restart_interval since restart_interval is no longer a single number commit 66a1f833 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Dec 16 20:47:13 2019 -0500 modified: exglobal_fcst_nemsfv3gfs.sh add postxconfig-NT_FH00.txt for inline post define rst_invt1 as the first element of restart_interval since restart_interval is no longer a single number commit b6201678 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Dec 16 20:48:23 2019 +0000 modified: sorc/build_fv3.sh to force the compiler to clean and recompile with any changes deleted: parm/config/config.base. This is created at the link time. Should not be incldued in the repo commit c805357a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Dec 16 19:10:13 2019 +0000 Vlab issue #65358 change model repo in checkout.sh to https://github.com/junwang-noaa/ufs-weather-model commit b17c0524 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Dec 16 13:56:33 2019 -0500 Vlab issue #65358 modified: sorc/checkout.sh to checkout new model branch postRstUgwd modified: scripts/exglobal_fcst_nemsfv3gfs.sh to include postxconfig-NT_FH00.txt to use the new UPP modified: parm/config/config.fcst add instruction for setting restart_intervals for different applications # restart_interval: $number # number=0, writes out restart files at the end of forecast. # number>0, writes out restart files at the frequency of $number and at the end of forecast. # restart_interval: "$number -1" # writes out restart files only once at $number forecast hour. # restart_interval: "$number1 $number2 $number3 ..." # writes out restart file at the specified forecast hours export restart_interval=${restart_interval:-6} commit 1df4ff49 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Dec 16 15:30:03 2019 +0000 Issue #1 - remove references to sfc from ecen script and ecen workflow * jobs/rocoto/ecen.sh - remove FHSFC_ECEN * ush/rocoto/setup_workflow.py - remove fhrsfc and associated scripting commit b8cff19a Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Dec 16 06:13:26 2019 +0000 Fixing issues with waveinit and waveprep and attempting to run gdasfcst. commit 4048d5b2 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Dec 15 19:25:11 2019 -0500 modified: HERA.env JET.env WCOSS_C.env to set up env parameters to run the newly added esfc step. commit 1598a13a Merge: a4c2b0cf 9740a139 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Dec 14 11:52:16 2019 -0500 Merge branch 'feature/gfsv16b' of gerrit:global-workflow into feature/gfsv16b commit a4c2b0cf Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Dec 14 11:51:25 2019 -0500 set export WRITE_DOPOST=F in config.efcs to force efcs step not to use inline poste commit 9740a139 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Sat Dec 14 11:46:29 2019 +0000 VLab Issue #65358 - correct efcs dependency error in setup_workflow.py commit 25b0a9fd Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Dec 13 16:28:22 2019 -0500 VLab Issue #65358 set OUTPUT_HISTORY=."false." in config.base as defult commit 61f32592 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Dec 13 16:19:33 2019 -0500 modified: parm/config/config.arch and parm/config/config.vrfy to get ride of the following error messages when running setup_workflow.py .../config.vrfy: line 39: [: =: unary operator expected .../config.arch: line 21: [: too many arguments commit bcfcd23c Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Dec 13 20:31:18 2019 +0000 Added additional wave jobs to setup scripts commit 97cdff03 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Dec 13 20:16:39 2019 +0000 VLab Issue #65358 - config file updates * parm/config/config.ecen - define NECENGRP (number of ecen groups) * parm/config/config.resources - add gldas to help comments commit 70845437 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Dec 13 19:46:38 2019 +0000 VLab Issue #65358 - modify ecen to reduce run time * refactor task ecen as metatask ecmn * add ensemble sfcanl tile job commit 290bc09e Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Dec 13 19:04:38 2019 +0000 Adding files for additional wave jobs commit 65410e5c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Dec 13 17:35:47 2019 +0000 VLab Issue #65358 - updates to FSU tracker * jobs/JGFS_FSU_GENESIS - correct typo * jobs/rocoto/arch.sh - copy tracker to ARCDIR * jobs/rocoto/vrfy.sh - add section to execute FSU tracker * modulefiles/module_base.wcoss_dell_p3 - load FSU tracker module * parm/config/config.vrfy - add VRFYFSU flag; update to ens_tracker v1.1.15.2; set GENESISFSU commit 7b0bc3e8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Dec 13 04:16:40 2019 +0000 modified: sorc/checkout.sh to check out gldas repo master instead of a feature branch modified: env/WCOSS_C.env correct a bug commit 8ff056ea Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 12 18:32:11 2019 +0000 VLab Issue #65358 - added new FSU tracker JJOB script commit 23ea3037 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Dec 12 05:19:27 2019 +0000 Updating build_fv3.sh to add correctly ww3 compile options commit 212aeb44 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Dec 12 02:58:50 2019 +0000 Adding WW3 as component in the gfsv16 for enabling coupled run. commit 6e450a89 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Dec 12 02:51:08 2019 +0000 Changes to make wave init functional end-to-end under GFSv16 workflow. Removing parm/wave directory (to be moved to GEFS repo, in GFSv16 parm were converted to config) commit 53079526 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Dec 11 20:47:44 2019 +0000 HOTFIX - VLab Issue #72346 - fix to rocoto_viewer on Hera commit c4b7e07b Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 11 15:01:28 2019 +0000 Added wave tasks to free-forecast mode and adjusted cycled mode dependencies commit 1c8f1e8a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Dec 11 14:17:23 2019 +0000 Vlab issue #65358 Add section to copy GDAS atcfunix files to $ARCDIR commit e36fed5f Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Dec 11 13:27:52 2019 +0000 Modifying spec of unified output point parameter from buoy to uoutpGRD to avoid errors as parameter buoy is also used to label output points themselves commit 126bd344 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Dec 10 18:44:27 2019 +0000 Partial changes to add side-by-side post commit 66add7f3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Dec 10 17:18:00 2019 +0000 Added wave rocoto job scripts, configs, and setup criteria commit b6a2742e Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Dec 9 16:36:20 2019 +0000 Adding changes to ensure RTOFS current files are read and prepared for coupled GFS runs. Several changes to add side-by-side post. commit dea2c7b6 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Dec 9 14:36:59 2019 +0000 Vlab issue #65358 * env/WCOSS_DELL_P3.env allow forecast model to use up to 28 pe per node on WCOSS_DELL_P3 * ush/gaussian_sfcanl.sh - set NETCDF_OUT based on OUTPUT_FILE commit e7b3b9a0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Dec 7 13:43:54 2019 -0500 modified: config.base.emc.dyn remove duplicated IAU session modified: ../../ush/hpssarch_gen.sh add to missing gfs analysis increment files to HPSS archive commit 9d447f93 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Dec 6 20:48:56 2019 +0000 Reconciling exglobal_fcst, checkout and link scripts to allow running both GFS and GEFS configs. Adding ability to link out_grd/pnt wave files to COMOUTWW3 commit db1d3be7 Merge: 25e423bd 37a3bd27 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Dec 6 15:51:10 2019 +0000 Merging feature/gfsv16b 37a3bd27 into feature/wave2global commit 37a3bd27 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Dec 6 13:59:37 2019 +0000 placement change for getncdimlen commit 53679d41 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Dec 5 20:59:25 2019 +0000 remove exgfs_postsnd.sh.ecf_netcdf commit 25e423bd Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Dec 5 19:50:43 2019 +0000 Cleaning up (changing wavemodTAG to WAV_MOD_TAG etc) commit edb1e10f Merge: f8b86c4e 395b55bb Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Dec 5 19:38:15 2019 +0000 Merge branch 'feature/gfsv16b' of ssh://vlab.ncep.noaa.gov:29418/global-workflow into feature/gfsv16b Pull newly commited files commit f8b86c4e Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Dec 5 19:35:59 2019 +0000 LEVS is obtained by getncdimlen commit 395b55bb Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 5 19:34:13 2019 +0000 VLab Issue #65358 - small fixes after sync merge with develop branch commit bd7c5fb5 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Thu Dec 5 19:26:46 2019 +0000 update to include nc utility getncdimlen commit d66e3808 Merge: a89c1de3 4cfec8b5 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 5 19:19:09 2019 +0000 Merge branch 'feature/gfsv16b' of gerrit:global-workflow into feature/gfsv16b commit a89c1de3 Merge: 0cc97b17 e4b6b7d3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 5 19:19:04 2019 +0000 Sync merge with develop branch commit 4cfec8b5 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Thu Dec 5 18:56:20 2019 +0000 Updated GEMPAK jobs commit 0cc97b17 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Dec 5 16:15:13 2019 +0000 update config.vrfy to point to /gpfs/dell1/nco/ops/com/gfs/prod/syndat instead of the default /gpfs/tp1/nco/ops/com/arch/prod/syndat defined in JGFS_CYCLONE_TRACKER commit eb219755 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Dec 5 05:58:01 2019 +0000 Adjustments to adding stats step commit ee2e88f2 Merge: 9c8f1bac ad441181 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Dec 4 21:53:57 2019 +0000 Merge branch 'feature/gfsv16b' of gerrit:global-workflow into feature/gfsv16b commit 9c8f1bac Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Dec 4 21:51:10 2019 +0000 GFS.v16 workflow is still using the gfs.v15 version of syndat_qctropcy.sh. syndat_qctropcy.sh was updated during gfs.v15.2 development. A bug was recently discovered which led to tcvitals not being copied back to HOMENHC (named nhc). I have copied the latest syndat_qctropcy.sh from ./nwprod/gfs.v15.2.5/ush to gfs.v16 workflow branch feature/gfsv16b, and made further changes to it per Diane's suggestion. if [ -s $HOMENHC/tcvitals ]; then cp nhc $HOMENHC/tcvitals fi if [ -s $HOMENHCp1/tcvitals ]; then cp nhc $HOMENHCp1/tcvitals fi commit ad441181 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Dec 4 20:48:20 2019 +0000 Correct typo in ufs-weather-model tag. The correct tag is gfs_v16.0.1, not gfs.v16.0.1. commit 094b43cd Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Dec 4 20:44:50 2019 +0000 Update ufs-weather-model to tag gfs_v16.0.1 commit 415def2b Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Dec 4 17:54:30 2019 +0000 update build_gfs_bufrsnd.sh commit d7c826ff Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Dec 4 15:39:44 2019 +0000 update to gfs_bufr.sh for NetCDF commit e8e838f7 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Dec 4 15:38:48 2019 +0000 update to exgfs_postsnd.sh.ecf commit 814cdbce Merge: e28880e7 6b6b72ee Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Dec 4 15:35:48 2019 +0000 Merge branch 'feature/gfsv16b' of ssh://vlab.ncep.noaa.gov:29418/global-workflow into feature/gfsv16b commit e28880e7 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Wed Dec 4 15:15:53 2019 +0000 bufr sonding run scripts updates for NetCDF commit 6b6b72ee Merge: e374ae8a be27010c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Dec 4 14:32:48 2019 +0000 Merge branch 'vrfy_metplus' at commit:be27010c into feature/gfsv16b commit e374ae8a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Dec 3 16:36:40 2019 -0500 remove duplicated checkout of gldas commit ed084df8 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Dec 2 16:05:53 2019 +0000 Changes made to file names to adjust to wave scripts ported to global-workflow commit be27010c Merge: dd3a89e5 f7754702 Author: Mallory Row <mallory.row@noaa.gov> Date: Mon Dec 2 15:12:17 2019 +0000 Merge branch 'feature/gfsv16_hera_crm' into vrfy_metplus commit 22522933 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Dec 2 04:42:17 2019 +0000 update config.arch to keep at least 96 hours of gdas data that are used as forcing to drive gldas forecast commit 0fbde082 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Dec 2 03:59:28 2019 +0000 modified: HERA.env and JET.env to include APRUN definitions forgldas jobs. modified: ../parm/config/config.gldas to add CPCGAUGE to define locally staged CPC Gauge precipitation datasets. commit 3bf2325a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Dec 2 02:22:44 2019 +0000 fix a bug in link_fv3gfs.sh commit 5127533d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Dec 1 21:32:11 2019 +0000 update jobs/JGDAS_GLDAS commit ce071a37 Merge: d73b3070 80faa242 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Dec 1 17:21:15 2019 +0000 Merge branch 'gfsv16_gldasnoah' of gerrit:global-workflow into feature/gfsv16b commit 80faa242 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Dec 1 17:18:03 2019 +0000 update JGDAS_GLDAS rocoto/gldas.sh to skip all but 00Z cycle for gldas step commit d73b3070 Merge: f7754702 1761b012 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Dec 1 04:23:28 2019 +0000 Merge branch 'gfsv16_gldasnoah' of gerrit:global-workflow into feature/gfsv16b, which is cloned from branch feature/gfsv16_hera_crm. All confilcts have been resolved. All modified files have been corss checked. This merge adds an option to run GLDAS after gdas anal step to spin up land surafce model with observed precipitation. GLDAS is checked out from https://github.com/NOAA-EMC/GLDAS. So far GLDAS is only run once per day (00Z cycle). GDAS surafce ICs on the tiles are updated with GLDAS spin-up soil moisture and soil temperature over snow-free land surafce. GLDAS spin-up run uses gdas flux files and CPC daily precip as forcing, and is run for the past 72 or 69 hours depending on the option of DOIAU. If DOIAU=NO, surafce ICs centered at the analysis time are updated; If DOIAU=YES, surafce ICs at the IAU beiginning windown (-3hr) are updated; The xml file created by running setup_workflow.py contains the gdas_gldas step only if RUN_GLDAS is set to YES in config.base. new file: driver/gdas/para_config.gdas_gldas new file: driver/gdas/test_gdas_gldas.sh modified: env/WCOSS_C.env modified: env/WCOSS_DELL_P3.env new file: jobs/JGDAS_GLDAS new file: jobs/rocoto/gldas.sh modified: parm/config/config.base.emc.dyn modified: parm/config/config.base.emc.dyn.iau modified: parm/config/config.base.nco.static new file: parm/config/config.gldas modified: parm/config/config.resources modified: sorc/build_gldas.sh modified: sorc/checkout.sh modified: sorc/fv3gfs_build.cfg modified: sorc/link_fv3gfs.sh modified: sorc/partial_build.sh deleted: ush/rocoto/config.base modified: ush/rocoto/setup_workflow.py commit 1761b012 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Nov 30 16:42:27 2019 +0000 modified: jobs/rocoto/gldas.sh modified: parm/config/config.base.emc.dyn modified: parm/config/config.base.emc.dyn.iau modified: parm/config/config.base.nco.static modified: parm/config/config.gldas modified: scripts/exglobal_fcst_nemsfv3gfs.sh commit 49d7b118 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Nov 27 17:09:34 2019 +0000 Saving changes to add gwes POST to global-workflow commit dd3a89e5 Merge: ee0f88f8 de8febca Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Nov 26 18:19:51 2019 +0000 Merge branch 'feature/gfsv16' into vrfy_metplus commit edcc6b11 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Nov 26 16:48:48 2019 +0000 remove exgdas_gldas.sh.ecf from global-workflow repo. Use the version under gldas repo commit ee0f88f8 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Nov 26 15:10:34 2019 +0000 Add parameter to control getting prepbufr data from HPSS commit 8de30c43 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Nov 26 15:09:55 2019 +0000 Update EMC_verif-global tag to verif_global_v1.4.0 commit 11d7fae2 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Nov 26 15:08:56 2019 +0000 Update metp resources commit f7754702 Merge: 3e05eacd de8febca Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Nov 25 17:14:58 2019 +0000 Merge branch 'feature/gfsv16' at commit:de8febca into feature/gfsv16_hera_crm commit 3e05eacd Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Nov 25 15:55:49 2019 +0000 Workflow changes for nc/nemsio * sorc/build_fv3.sh - remove "NO NO" from fv3 compile.sh, remove commented out mv line * ush/hpssarch_gen.sh - update enkf HPSS archive list for use with nc/nemsio * ush/rocoto/setup_workflow.py - replace ".nc" suffix with gridsuffix variable commit 5dff08e8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 25 02:34:17 2019 +0000 further updated exgdas_gldas.sh.ecf to point to the 6-tile restart files instead of copying them to the local running directory to speed up the job commit ba7a01d9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 24 23:13:27 2019 +0000 jobs/JGDAS_GLDAS and scripts/exgdas_gldas.sh.ecf have been extensively modified to make them applicable in the GFS global workflow. Attempts were also made to generalize the scripts for running the system at any given resolution instead of the hardwried T1534 resolution. Ush scripts in GLDAS repo have also been updated. The following scripts have also been modified env/WCOSS_DELL_P3.env parm/config/config.base.emc.dyn parm/config/config.base.emc.dyn.iau parm/config/config.base.nco.static parm/config/config.gldas sorc/link_fv3gfs.sh ush/rocoto/setup_workflow.py commit f70a299d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Nov 21 02:29:45 2019 +0000 Modified wave PREP step config files for accommodating move of wave j-jobs, ex/ush scripts, fix_wave and parm files into the global-workflow structure. Changed COMICE to COMINice in wave scripts. Renamed ush scripts for direct lreationship to WW3 package program names (eg ww3_prnc) commit 248fd28a Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Nov 19 22:46:04 2019 +0000 Adding changes that make INIT step functional for GEFS after merging wave j-jobs, ex/ush-scripts, parm, fix into global-workflow commit 3173916a Author: Cory.R.Martin@noaa.gov <cory.r.martin@noaa.gov> Date: Mon Nov 18 18:22:32 2019 +0000 Changed rocoto setup python scripts to look for .txt and not .nc commit 5832e76a Author: Cory.R.Martin@noaa.gov <cory.r.martin@noaa.gov> Date: Mon Nov 18 17:49:38 2019 +0000 Fixed another spot where logfNNN.txt should be instead of .nemsio/.c commit de8febca Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Nov 18 16:38:57 2019 +0000 Vlab issue #65358 Update sorc/checkout to check out ufs-weather-model tag gfs.v16.0.0 in sorc/fv3gfs.fd commit dc23e194 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 18 09:40:00 2019 +0000 Set up branch gfsv16_gldasnoah to add GLDAS to GDAS cycle for spinning up land initial conditions. The following files were copied over from workflow branch gfsv16_gldas, which was set up by Hang Lei driver/gdas/para_config.gdas_gldas driver/gdas/test_gdas_gldas.sh jobs/JGDAS_GLDAS jobs/rocoto/gldas.sh parm/config/config.gldas scripts/exgdas_gldas.sh.ecf sorc/fv3gfs_build.cfg sorc/partial_build.sh sorc/build_gldas.sh sorc/checkout.sh The following files were modified locally in this branch to set up running environment and to use the Python wrokflow setup script to create rocoto xml files. An option DO_GLDAS is defined in config.base. The xml file will be generated with or without the GLDAS step based DO_GLDAS setting. modified: env/WCOSS_C.env modified: env/WCOSS_DELL_P3.env modified: parm/config/config.base.emc.dyn modified: parm/config/config.base.emc.dyn.iau modified: parm/config/config.base.nco.static modified: parm/config/config.resources modified: sorc/link_fv3gfs.sh deleted: ush/rocoto/config.base modified: ush/rocoto/setup_workflow.py Much more work is to be done to get the GLDAS step merged into the workflow. The J-job script JGDAS_GLDAS, running script exgdas_gldas.sh.ecf, and all GLDAS ush scripts need to be updated to add error checks, to use standard module util executables, to pass correctly directory names and variable names from the parent script to child script. config.gldas is essentiall empty at this point. Some parameters found in driver/gdas/para_config.gdas_gldas need to be copied over to config.gldas. Python scripts need to be futher updated to run GLDAS for only 00Z cycle or for all four cycles. All GLDAS fix files and seetings are hardwiredd to the C768 (T1534) resolution. Need to make it flexible to run the system at different resolutions. commit d922bb91 Author: Cory.R.Martin@noaa.gov <cory.r.martin@noaa.gov> Date: Fri Nov 15 21:52:24 2019 +0000 Change logfNNN files from .nc/.nemsio suffix to .txt in hpssarch_gen.sh commit e8cbf92f Author: Cory.R.Martin@noaa.gov <cory.r.martin@noaa.gov> Date: Fri Nov 15 21:50:04 2019 +0000 Change logfNNN files from .nc/.nemsio suffix to .txt because they are ASCII commit 6923dcc2 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Nov 15 20:25:02 2019 +0000 Vlab issue #65358 modify scripts to read NetCDF data commit c1381a06 Merge: 81edb37c 2f40ff96 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Nov 15 20:17:20 2019 +0000 Merge branch 'feature/gfsv16' of ssh://vlab.ncep.noaa.gov:29418/global-workflow into feature/gfsv16 commit 81edb37c Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Fri Nov 15 20:11:15 2019 +0000 Vlab issue #65358 modify Bufrsnd to read in NetCDF data commit 2f40ff96 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Nov 13 21:01:36 2019 +0000 Vlab issue #65358 Update gfs_post.fd checkout to clone from https://github.com/NOAA-EMC/EMC_post.git commit 041380f0 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Nov 8 20:50:33 2019 +0000 Vlab issue #65358 Replace crtm/2.2.6 with crtm/2.3.0 in module_base.wcoss_dell_p3 commit 79c318dd Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Nov 8 17:53:47 2019 +0000 Finalizing changes to retain history relative to GEFS/scripts source for exwave scripts commit 4388122b Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Nov 8 17:50:52 2019 +0000 Staging intermediate name change to retain history in exwave scripts relative to source GEFS/scripts commit f4c5e2c2 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Nov 8 17:48:08 2019 +0000 Staging removal of obsolete files commit 6b8321b2 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Nov 8 15:10:24 2019 +0000 Removing extensions gefs/gens (all will be set at the appropriate j-job, links will be made to fix_wave.), making error reporting codes consistent acrros ex-scripts. commit 18002881 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Nov 8 13:48:18 2019 +0000 Renaming after generalization of calls to ex-scripts from GEFS workflow commit 7bae5b66 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Fri Nov 8 13:30:06 2019 +0000 Changing extension to gens matchin NCO parameter, which is set to gens for all gefs-related runs. commit a6d30d98 Author: jswhit2 <Jeffrey.S.Whitaker@noaa.gov> Date: Fri Nov 8 13:23:38 2019 +0000 handle IAU 'coldstart' using warm start files from non-IAU run commit 4bd4562e Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Nov 7 21:48:25 2019 +0000 Adding wave components to global-workflow (fix/wave, jobs, parm/wave, scripts/exwave* ush/wave_*). Massive changes still required for this to work. Paths need to be re-routed, script names need to be adjusted, hard-wired ush-script parameters need to be moved into parm/wave. commit d22bff4c Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Thu Nov 7 18:24:39 2019 +0000 check sign of delz in enkf_chgres_recenter; change some scripts to use SUFFIX commit 3336d26b Merge: 8d994cfb d635fe37 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Thu Nov 7 14:09:48 2019 +0000 Merge branch 'feature/gfsv16' into feature/gfsv16_hera_crm commit 8d994cfb Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Nov 6 18:26:34 2019 +0000 Change sign of delz for enkf_chgres_recenter_ncio commit d635fe37 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Nov 5 19:56:32 2019 +0000 Vlab Issue #65358 Updated ecflow's defs and scripts commit 391c793d Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Nov 5 19:24:47 2019 +0000 Updated drivers and gempak/ush scripts commit fb95cd3c Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Tue Nov 5 05:34:56 2019 +0000 Change way wave restart files are produced In order to facilitate faster cycle turnover, instead of copying the wave restart files at the end of the forecast, symbolic links to the final destination are created before the forecast. This allows the restart directory to be populated immediately, so that the next cycle can commence while the current cycle finishes. Change-Id: I887dddec88e32ad08fefc5a8080c9f553965b9dc commit 750ba243 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Sun Nov 3 08:07:06 2019 +0000 Update NEMS app for new WW3 version An undocumented change to how the peak frequencies were computed in WW3 resulted in unrealistically large peak frequencies. Coupled with a bug in Jasper, this caused crashes during grib2 encoding. Change-Id: Iface172ec8f6da816a4b56af73e8fb091dd57584 commit 104fa736 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Nov 1 20:02:17 2019 +0000 Vlab issue #65358. Update 'checkout.sh' to check out GLDAS repo. Update build system to build GLDAS programs. Change-Id: Icf3e496ab76f398779cd97e01a250f8720ddfcb1 commit c2696f69 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Fri Nov 1 10:02:45 2019 +0000 Update NEMS app to incorporate latest WW3 changes The NEMS app is updated to incorporate changes to WW3 for the grib2 encoders and make profiling optional to improve performance. Change-Id: I6b7c96128f116698c27f037129db4ba8f591551b commit e3059e4e Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Oct 31 17:53:18 2019 +0000 Initial commit of adding gfsmetp metatask creation in cycled XML commit 8a5e5358 Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Oct 31 16:48:15 2019 +0000 Fix gfsmetp gfsarch cycle_offset dependency value commit d59bdbaf Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Oct 31 15:42:08 2019 +0000 Vlab issue #65358. gaussian_sfcanl - Rename program build script to better match its name. Change-Id: Ied731beaa567a50e9d881eaee1e58fc63ae28557 commit 718cebf2 Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Oct 31 15:24:05 2019 +0000 Vlab issue #65358. gaussian_sfcanl - Update comments. Add global attributes to netcdf file. Change soill flag value over land ice and open water from '1' to '0' to be consistent with sample gaussian netcdf files from Fanglin. Change-Id: Idadcbd725a325cb8f06fc51c4ecf525aad35520d commit a1eb3b46 Merge: 3ad83dc1 a9f2be62 Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Oct 31 13:18:44 2019 +0000 Merge branch 'feature/gfsv16' into vrfy_metplus commit 3ad83dc1 Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Oct 31 13:17:35 2019 +0000 Initial commit of adding gfsmetp metatask creation in XML commit c79d7e64 Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Oct 31 12:08:05 2019 +0000 Initial commit of adding gfsmetp metatask commit a9f2be62 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Oct 31 10:28:46 2019 +0000 Vlab issue #65358 Add tcyc to scripts/exglobal_fcst_nemsfv3gfs.sh. Update EMC_post checkout. commit 46ae4ca6 Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Oct 30 21:29:19 2019 +0000 Vlab issue #65358. gaussian_sfcanl: Add remaining nst variables to netcdf output option. Add logical flag - netcdf_out - to set output option at runtime (output netcdf when true). ./ush/gaussian_sfcanl.sh - Add 'netcdf_out' logical flag. For now use default of false (nemsio) so as to not break current functionality. Change-Id: I0a79474655592cc7a95a6ad2da4d16493ac4b063 commit cd70f5ef Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Oct 30 17:51:57 2019 +0000 Vlab issue #65358. gaussian_sfcanl: Add remaining noah fields for netcdf output option. Change-Id: I352a417962c29b38f9cdf9684debe54bbaff81a3 commit 4db99b7d Merge: 541867a1 b295567e Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Oct 30 14:40:37 2019 +0000 Merge branch 'port2hera' into feature/gfsv16_hera_crm commit 5e84c0bd Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Oct 29 21:14:35 2019 +0000 Vlab issue #65358 gaussian_sfcanl: Additional noah fields output to netcdf file. Change-Id: I3e5d3ee194fd2672fca01ce77039ad1684bf9aa4 commit f863d641 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Oct 29 14:36:30 2019 +0000 Vlab Issue #65358 Updated gempak files and scripts commit 29ba9535 Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Oct 29 14:09:01 2019 +0000 Vlab Issue #65358 Updated GFS drivers commit 21a1644c Author: Boi Vuong <Boi.Vuong@noaa.gov> Date: Tue Oct 29 13:38:58 2019 +0000 Vlab Issue #65358 Removed GFS FAX jobs and scripts commit d7a36e1f Author: George Gayno <George.Gayno@noaa.gov> Date: Mon Oct 28 20:55:37 2019 +0000 Vlab issue #65358. Begin updates to "gaussian_sfcanl" program to output surface file in netcdf format. Change-Id: I3c8dd74c93e36f7c3a3ae04be2d0d10a92da382e commit 632bfe92 Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Fri Oct 25 16:56:16 2019 +0000 Fix previous merge enabling Hera Change-Id: I277baff3dd5c8f7485d4be1c8052837c3fbadc46 commit a9de0f78 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 25 14:13:03 2019 +0000 VLab Issue #65358 modified: modulefiles/module_base.wcoss_c, add prerequsite intel/16.3.210 for Module 'esmf/8.0.0bs48' modified: parm/config/config.fcst, set default land model to lsm=1 (Noah LSM) modified: sorc/checkout.sh, check out model gfsv16_bugfix and UPP post_gfs_netcdf for running model with inlinepost. commit 78924915 Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Fri Oct 25 13:47:42 2019 +0000 Add capability to run on Hera Change-Id: I61da1adcfa1b0ff09222c15b2c4e58c6af8a853b commit a29c723c Merge: 1958210a e150d73e Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Oct 25 12:13:23 2019 +0000 Merge branch 'feature/gfsv16' into vrfy_metplus commit 541867a1 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Thu Oct 24 20:32:27 2019 +0000 Fixed some bugs associated with netCDF/calc_analysis commit e150d73e Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Oct 24 19:00:31 2019 +0000 Vlab issue #65358 Begin update of gaussian_sfcanl program to output gaussian surface file in netcdf. Retain current option to output file in nemsio. Change-Id: I8e0b41ef7372a115bd13dc4d068bec8df86b6ee5 commit 24e71231 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Oct 22 15:33:49 2019 -0400 VLab Issue #65358 Add the option, WRITE_DOPOST, to global-workflow to run post from within the model. The model writes out post-processed "master" and "sflux" files. Corresponding changes have been made to the offline UPP in branch https://github.com/yangfanglin/EMC_post/tree/inlinepost. In current scripts/exglobal_fcst_nemsfv3gfs.sh model_configure is created in two different blocks for IAU is on and off, separately. This is prone to making msiatke when the script is updated. These two blocks are merged into one which works for both IAU on and off cases. modified: jobs/rocoto/post.sh modified: parm/config/config.base.emc.dyn modified: parm/config/config.base.emc.dyn.iau modified: parm/config/config.base.nco.static modified: parm/config/config.post modified: scripts/exglobal_fcst_nemsfv3gfs.sh modified: sorc/checkout.sh commit 1e7a76de Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Oct 22 19:06:06 2019 +0000 Vlab issues #65358 and #67852. Remove 'gdas2gldas' and 'gldas2gdas' programs as these will reside under the GLDAS repo on github: https://github.com/NOAA-EMC/GLDAS Change-Id: I87bbac3de9d33db12925d3d6b077b5812c0ebdf4 commit 8da159d9 Merge: cee64779 cec5365d Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Tue Oct 22 14:49:27 2019 +0000 Merge branch 'feature/gfsv16' into feature/gfsv16_hera_crm commit cee64779 Merge: 616bd08d b5d8124c Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Tue Oct 22 14:49:06 2019 +0000 Merge branch 'port2hera' into feature/gfsv16_hera_crm commit 616bd08d Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Tue Oct 22 14:47:52 2019 +0000 Added enkf_chgres_recenter_nc to gfsv16 workflow build scripts commit 7fee1013 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Tue Oct 22 14:44:58 2019 +0000 Added enkf_chgres_recenter_nc to gfsv16 workflow commit 1958210a Merge: adf6de46 cec5365d Author: Mallory Row <mallory.row@noaa.gov> Date: Mon Oct 21 15:56:39 2019 +0000 Merge branch 'feature/gfsv16' into vrfy_metplus commit cec5365d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Oct 21 15:20:18 2019 +0000 VLab Issue #65358 Update EMC_verif-global tag to verif_global_v1.3.1 commit e748ef12 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Sun Oct 20 08:06:20 2019 +0000 Update NEMS app to version for GEFS retrospective The NEMS app is updated to check out the version for phase 2 of the GEFS v12 retrospective. Change-Id: Iddfa75a78965cf19eca2bca7f9fbbf45dcd457a6 commit 2cf1a281 Merge: 29edaf0d 59746e18 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Thu Oct 17 18:04:11 2019 +0000 Merge branch 'feature/gfsv16' into feature/gfsv16_hera_crm commit 29edaf0d Merge: 59a76637 4a98049f Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Thu Oct 17 16:49:38 2019 +0000 Merge branch 'port2hera' into feature/gfsv16_hera_crm commit 59a76637 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Thu Oct 17 16:43:20 2019 +0000 First attempt to get global-workflow working with netCDF IO and GFSv16 commit 59746e18 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Oct 15 18:50:12 2019 +0000 Vlab Issue #65358 Add off hour sfluxfXXX.grib2 files to HPSS gdas.tar commit adf6de46 Merge: 473728bb 88cbff41 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Oct 15 12:14:44 2019 +0000 Merge branch 'feature/gfsv16' into vrfy_metplus commit b7dc7e61 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Sat Oct 12 18:29:16 2019 +0000 Update app for WW3 OMP fix Change-Id: I41523cb5313b18eba4301d599f99ec67ea6c9bc4 Refs: #58418 commit 88cbff41 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 11 20:26:34 2019 +0000 Vlab Issue #65358 Update ufs_util to release/v2.0.0 which includes A few sea ice related issues in the NSST analysis: Issue #18 (#20) Updates to global_cycle: Tf analysis for the grids with sea ice done using a salinity dependent formula (instead of using 271.2 K). Update sfcsub.F to the latest version used by the forecast model (includes elimination of masked interpolation for substrate temperature and some updates to Fortran 90 standards). The global_cycle.sh script was updated to reference a new global salinity dataset. Updates to global_chgres - Update sfcsub.F to use same version as global_cycle. Feature/hera port (#25) Update repository to run on Hera, the replacement for Theia. Remove all references to Theia. commit 59883cb4 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Thu Oct 10 01:51:06 2019 +0000 Fix bug with creating WW3 restart directory Change-Id: I7002db6175d4e994318e6274071dca1475ae3121 Refs: #58418 commit a2b355c0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Oct 9 19:26:52 2019 +0000 chnage TELTIM for a few low-res cases in config.fv3 from 420s to 450s. 420 is not divisible by 3600, this leads to fractional forecast hour in forecast output and breaks downstream enkf jobs commit 519a99c6 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Wed Oct 9 19:10:26 2019 +0000 Update NEMS app version for Hera port Change-Id: I19cdf40e4c0a147d138cc59fc720b7608b51554a Refs: #58418 commit c7a4df4d Author: catherine.thomas <catherine.thomas@noaa.gov> Date: Tue Oct 8 16:55:36 2019 -0400 Vlab Issue #65358 Added a commented out line for convective cloud to the diag_table_da file commit a9309088 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Mon Oct 7 20:18:14 2019 +0000 Update post to more recent version Change-Id: I8aab5d3d532fbfc444abd4c1c71e10f55906500c Refs: #58418 commit 7ef57224 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Sun Oct 6 21:00:04 2019 +0000 VLab Issue #65358 Update sorc/checkout.sh to populate gfs_post.fd with develop branch from https://github.com/NOAA-EMC/EMC_post commit 21b037b1 Merge: be5986e4 cc2d15f7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 4 15:30:06 2019 -0400 Merge branch 'feature/gfsv16' of gerrit:global-workflow into feature/gfsv16 commit be5986e4 Merge: e52ecec6 332ef296 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 4 15:23:57 2019 -0400 Merge branch 'feature/gfsv16' of gerrit:global-workflow into gfsv16fyang3 commit cc2d15f7 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Oct 4 19:23:12 2019 +0000 Vlab issues #65358 and #67852. gdas2gldas - Add 'noahmp' flag. When true, process noah and noahmp fields. When false, only process noah fields. The output nemsio file will always contain records for noah and noahmp. When processing noah only, the noahmp records will contain missing flag values. Change-Id: I3c02662926e64386493d576f989296c718e0fcf3 commit e52ecec6 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 4 15:22:08 2019 -0400 VLab Issue #65358 update esmf lib in module files to version esmf/8.0.0bs48 Update model to tag version gfs.v16_PhysicsUpdate commit 332ef296 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Oct 4 12:25:29 2019 +0000 Vlab issues #65358 and #67852. gldas2gdas - Remove unused namelist variable "orog_files_gdas_grid". Change-Id: I4be15b0e6749986a673303dc04a3e27d93b08168 commit 735f4216 Merge: 865ea5aa c68728b5 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Thu Oct 3 17:05:25 2019 +0000 Merge branch 'develop' into lgan_fv3_ww3 commit 865ea5aa Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Thu Oct 3 16:54:24 2019 +0000 Update NEMS app checkout to ver with GSDCHEM 0.8.8 Change-Id: Idd286ae4300f0b067d3f38a2aa76b27f2d3911df Refs: #58418, #62104 commit cb4594e9 Merge: 25a564c5 8fbf33af Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Thu Oct 3 15:11:14 2019 +0000 Merge remote-tracking branch 'origin/feature/gfsv16' into feature/gfsv16_hera_crm commit 25a564c5 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Thu Oct 3 14:55:20 2019 +0000 Change checkout of GSI to be feature/fv3_ncio commit 8fbf33af Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Oct 2 00:16:54 2019 +0000 VLab Issue #65358 Add logicals do_sppt, do_shum, and do_skeb to namelist gfs_physics_nml in exglobal_fcst_nemsfv3gfs.sh commit ad1b5281 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Tue Oct 1 20:19:19 2019 +0000 Fix issue with exglobal not creating wave restart directory The wave restart directory was not being created by exglobal, causing the copying of wave restart files to fail. Modified the directory creation to use the new restart subdirectory. Change-Id: I77fe3a72249efd3e688ece47f0778b30e034ff24 Refs: #58418 commit 3a062681 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Oct 1 12:50:49 2019 +0000 VLab Issue #65358 Update EMC_verif-global tag to verif_global_v1.2.2 commit 20bba55d Author: George Gayno <George.Gayno@noaa.gov> Date: Mon Sep 30 19:32:10 2019 +0000 Vlab issues #65358 and #67852. gdas2gldas - Some code clean up. Change-Id: I48407fe4643b50b41da04964c32ae0269911b73e commit 3e44b803 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Sep 30 13:33:18 2019 +0000 VLab Issue #65358 Update EMC_verif-global tag to verif_global_v1.2.1 commit 173e362c Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Sep 26 16:18:13 2019 +0000 Vlab issues #65358 and #67852. gldas2gdas - Correct diagnostic write of interpolated soil type. Turn off diagnostic write for ops. Change-Id: I6abcfdb6d6cc76c347126c661e367fc5a52de76c commit 18646dea Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Sep 26 13:00:33 2019 +0000 VLab Issue #65358 Update to EMC_verif-global tag verif_global_v1.2.0 commit 354fb0c7 Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Sep 25 21:22:17 2019 +0000 Vlab issues #65358 and #67852. gldas2gdas - Add soil moisture rescaling. Add logic to write routine to account for gdas interpolation mask. Change-Id: I58d40377ed3b75404f732570f71bab6a59e09a4b commit 8a312b39 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Sep 25 02:26:51 2019 +0000 global-workflow wave component: adding rundata and restart directories to store model run files (binary ww3, log, forcing inputs etc) and restart following new directory tree structure. commit 8949835c Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Sep 24 20:53:15 2019 +0000 Vlab issues #65358 and #67852. gldas2gdas - add build module for theia. fix unallocated variable 'weasd'. Change-Id: Iccd97dae715d7d0878595c604da34ac7e0d499a5 commit bd2ed957 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Sep 24 20:07:02 2019 +0000 Vlab issues #65358 and #67852. gldas2gdas - Add processing of soil temp and soil moisture. Read gldas data from nemsio file instead of 1d restart file. Flip n/s poles for nemsio file. Change-Id: I3b7a96338cc8e5d706fb6ae538b7aaec2872d3ec commit 473728bb Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Sep 24 15:14:02 2019 +0000 Update EMC_verif-global tag number to 1.2.0 commit abd00919 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Sep 24 15:12:28 2019 +0000 Updates for version 16 commit 673142ab Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Sep 24 00:16:06 2019 +0000 Vlab issues #65358 and #67852. gldas2gdas - flip n/s poles of gldas grid. read gldas soil type and use as intepolation mask. Change-Id: I117e89f2b61817683c937857e795fbdadf412369 commit 1db363f5 Author: George Gayno <George.Gayno@noaa.gov> Date: Mon Sep 23 23:19:23 2019 +0000 Vlab issues #65358 and #67852. gldas2gdas - update interpolation to account for gdas mask. Change-Id: Ia46bb70b399c5aa8828ac38f71e8cb2ceb67154b commit 6f1ad409 Author: George Gayno <George.Gayno@noaa.gov> Date: Mon Sep 23 18:30:22 2019 +0000 Vlab issues #65358 and #67852. gldas2gdas - Basic framework of new program to initialize gdas from gldas data. Change-Id: I765f6fc5a092be301eb800ce2a2c124946a800e4 commit 4d89ddac Author: George Gayno <George.Gayno@noaa.gov> Date: Sun Sep 22 18:02:07 2019 +0000 Vlab issues #65358 and #67852. gdas2gldas - write noah fields to nemsio file. Change-Id: Iaf67dbe387e4d01dc8373f65b61fd85a04c9bf3d commit 80c30b5c Author: George Gayno <George.Gayno@noaa.gov> Date: Sun Sep 22 00:08:08 2019 +0000 Vlab issues #65358 and #67852. gdas2gldas - add read of config namelist to model_grid.F90 Change-Id: I347e66889bfc173f7b2142b8bb05bd763e4bf3b1 commit 5793d9ee Author: George Gayno <George.Gayno@noaa.gov> Date: Sat Sep 21 23:24:35 2019 +0000 Vlab issues #65358 and #67852. gdas2gldas - remap noah fields. Change-Id: I4b1470e663a9351a5d8a6c0754cb3c9094beab25 commit 23f2f998 Author: George Gayno <George.Gayno@noaa.gov> Date: Sat Sep 21 18:46:20 2019 +0000 Vlab issues #65358 and #67852. gdas2gldas - setup target grid noah fields. Change-Id: I9217521ed816a25458723f13bf5b15003449d4b4 commit eb4b8407 Author: George Gayno <George.Gayno@noaa.gov> Date: Sat Sep 21 18:22:11 2019 +0000 Vlab issues #65358 amd #67852. gdas2gldas - Add read of noah fields. Change-Id: I9da5b601e6de2f72831da1a796fe23688a93ea53 commit e046668e Author: George Gayno <George.Gayno@noaa.gov> Date: Sat Sep 21 16:27:32 2019 +0000 Vlab #65358 and #67852. gdas2gldas - add remaining noahmp fields. Change-Id: If508823e20a2e29803ed55acc878eaaabfe08a0e commit 346ad154 Author: George Gayno <George.Gayno@noaa.gov> Date: Sat Sep 21 14:22:45 2019 +0000 Vlab issues #65358 and #67852. gdas2gldas - Flip the N/S poles in output nemsio file. Change-Id: I83a1b9aa936f68158fb27d10d4c6302950d41689 commit 274c3b90 Author: George Gayno <George.Gayno@noaa.gov> Date: Sat Sep 21 04:05:00 2019 +0000 Vlab issues #65358 and #67852. gdas2gldas - add more noahmp fields. Change-Id: I7c34973adcde8f212dae3ca31b7c056e2857cf04 commit b4e48920 Author: George Gayno <George.Gayno@noaa.gov> Date: Sat Sep 21 03:01:44 2019 +0000 Vlab issues #65358 and #67852. gdas2gldas - add processing of some noahmp fields. Change-Id: Ib3d453a52270f84a9b340f759d27e25a07848e40 commit be85a6cd Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 20 21:13:16 2019 +0000 Vlab issues #65358 and #67852. 'gdas2gldas' program - process orography. Change-Id: I262568ec844a020a4bd5073b330e53831a514422 commit e7f52d7b Merge: 9e453009 b8619596 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Sep 20 16:37:42 2019 -0400 VLab Issue #65358 update parm/config/config.fcst and scripts/exglobal_fcst_nemsfv3gfs.sh to remove the ishuffle option commit b8619596 Merge: fb738ff4 67f1a3b2 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Sep 20 16:29:00 2019 -0400 Merge branch 'gfsv16fyang3' of gerrit:global-workflow into gfsv16fyang3 commit fb738ff4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Sep 20 16:28:29 2019 -0400 remove the ishuffle option for netcdf output commit 9e453009 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 20 20:07:02 2019 +0000 Vlab issues #65358 and #67852. Updates to gdas2gldas program. Change mapping to ignore input and target grid masks. Begin processing of noahmp fields. Change-Id: I6edc0c2bb675cbd6c97cf27c1dda4efb2938da3b commit 6c143cfe Author: catherine.thomas <catherine.thomas@noaa.gov> Date: Fri Sep 20 08:59:14 2019 -0400 VLab Issue #65358 Modified nsig_ext in config.anal and config.eobs for L127 GPSRO commit 4af57a1b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Sep 19 18:10:56 2019 +0000 VLab Issue #65358 Remove nemsio_cvt from list of executables and directories to link/copy in sorc/link_fv3gfs.sh since nemsio_cvt.fd is no longer in ufs_utils. commit 7c8143f8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Sep 19 02:22:55 2019 +0000 Merge changes made in branch gfsv16_physupdt_netcdf into branch feature/gfsv16. Update the model and scripts to use the latest physics configuration including UGWP, and add the option to write our forecast history files in netcdf format with compression. see https://vlab.ncep.noaa.gov/redmine/issues/68678 for the detail of the model changes. UFS_UTIL was also updated to use high-res land-sea mask (FNMSKH) in global_chgres.sh and global_cycle.sh for the interpolation of climatological SST to reduce temperature biases over small lakes. ----------------------------------- Squashed commit of the following: commit 665f7038 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Sep 18 11:09:54 2019 -0400 latest changes have been merged to branch gfsv16_physupdt_netcdf commit 856bd56b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 17 22:35:46 2019 -0400 use FV3 branch SM_gfsv16_physupdt_netcdf, which is forked from gfsv16_physupdt_netcdf but updated to the latest master I5ce54ed1bb9ab1ce10f28ddb1e0e6ba6689905b5 commit aa3e11ec Merge: 0d853b7c 9f079f3b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 17 15:52:51 2019 -0400 Merge branch 'feature/gfsv16' of gerrit:global-workflow into gfsv16fyang3 commit 0d853b7c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Sep 16 23:32:51 2019 -0400 change ufs_util repo back to the master version commit 2b2449bf Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Sep 15 14:35:47 2019 -0400 add netcdf option in config.post and rocoto/post.sh commit 7c9bb3dc Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Sep 14 13:15:46 2019 -0400 Add options to write 1) RESTART files with compression 2) forecast files in netcdf format with compression make sure LINKed file names in DATA and ROTDIR match each other modified: parm/config/config.fcst modified: scripts/exglobal_fcst_nemsfv3gfs.sh commit 13ea6ceb Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Sep 14 01:37:54 2019 +0000 modified: ../parm/config/config.fv3 Further tuned GWD coefficients. modified: checkout.sh: use temporary https://github.com/yangfanglin/UFS_UTILS commit 719688bc Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Sep 13 04:38:18 2019 +0000 VLab Issue #65358 1) update scripts to turn on all physics updates targeted for GFS.v16. 2) tuned coefficients for running ogwd and mountain block for 127-L GFS. 3) adjust computing resources in config.fv3 for 127-L GFS. 4) add to worflow the option to write out netcdf files with compression. See Jeff Whitaker's FV3 ticket https://vlab.ncep.noaa.gov/redmine/issues/68487 for the detail. 5) Create a UFS_UTIL branch "gfsv16" to set FNMSKH to T1534 land-sea masks for running CHGRES and surface cycle. Changes to be committed: modified: parm/config/config.base.emc.dyn modified: parm/config/config.base.emc.dyn.iau modified: parm/config/config.base.nco.static modified: parm/config/config.fcst modified: parm/config/config.fv3 modified: scripts/exglobal_fcst_nemsfv3gfs.sh modified: sorc/checkout.sh commit 31f91457 Merge: 23671eee 8214216f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Sep 13 02:56:08 2019 +0000 Merge branch 'feature/gfsv16' of gerrit:global-workflow into gfsv16fyang3 commit 23671eee Merge: ab07a77c 06a217f1 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Aug 27 22:53:19 2019 -0400 Merge branch 'feature/gfsv16' of gerrit:global-workflow into gfsv16fyang3 commit ab07a77c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Aug 18 12:51:30 2019 +0000 remove outdated readme.txt commit 24bcacb6 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Aug 18 03:55:36 2019 +0000 add back checkout.sh commit 2d33c2f6 Merge: 8a7d50ef 4222fbf4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Aug 18 03:46:57 2019 +0000 update to feature/gfsv16 commit 8a7d50ef Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Jun 29 19:11:19 2019 +0000 update model tag to gfs.v16_preCCPP_20190610_v1.0.1, in which io/FV3GFS_io.F90 was upfdate to restore warm-restart reproducibility capability commit 5bd7d817 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 26 02:48:38 2019 +0000 use model branch gfs.v16_preCCPP_20190610_v1.0.0 which contains Helin's fix to FV3GFS_io.F90 commit ae08fe77 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 26 00:08:26 2019 +0000 change lheatstrg=T if lsm=1 and lheatstrg=F if lsm=2 commit 513eb3a9 Merge: 57a51f8c 0637ec7a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 25 20:05:02 2019 +0000 Merge branch 'feature/gfsv16' of gerrit:global-workflow into gfsv16fyang3 commit 57a51f8c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 25 20:03:58 2019 +0000 se default optveg=1 in exglobal_fcst_nemsfv3gfs.sh to turn off dynamic vegetation commit 67f1a3b2 Merge: 665f7038 d0c8f2dd Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Sep 19 02:20:14 2019 +0000 Merge branch 'feature/gfsv16' of gerrit:global-workflow into gfsv16fyang3 commit 665f7038 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Sep 18 11:09:54 2019 -0400 latest changes have been merged to branch gfsv16_physupdt_netcdf commit d0c8f2dd Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Sep 18 12:12:43 2019 +0000 Vlab issues #65358 and #67852 Updates to 'gdas2gldas' program - Add interpolation of soil temp and soil moisture from tiled gdas to gaussian gldas. Add routine to update gldas restart file with updated soil fields. Change-Id: Ie2fba2c6e74b160cb8c27f917c09e673da5c588b commit 67adca4a Author: Henrique Alves <henrique.alves@noaa.gov> Date: Wed Sep 18 02:47:03 2019 +0000 Winding back changes to wave-related parms PDY_PCYC etc, and adding correct parm cyc defining directory, that was erroneously pointing to non-existent parm cycm1. commit 856bd56b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 17 22:35:46 2019 -0400 use FV3 branch SM_gfsv16_physupdt_netcdf, which is forked from gfsv16_physupdt_netcdf but updated to the latest master I5ce54ed1bb9ab1ce10f28ddb1e0e6ba6689905b5 commit 65fe319c Author: Henrique Alves <henrique.alves@noaa.gov> Date: Tue Sep 17 21:44:59 2019 +0000 Adding parms CDATE_PCYC, PDY_PCYC and cyc_pcyc to exglobal_fcst_nemsfv3gfs.sh for setting location of wave component restart file as a function of time between cycles commit aa3e11ec Merge: 0d853b7c 9f079f3b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 17 15:52:51 2019 -0400 Merge branch 'feature/gfsv16' of gerrit:global-workflow into gfsv16fyang3 commit 0d853b7c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Sep 16 23:32:51 2019 -0400 change ufs_util repo back to the master version commit 9f079f3b Author: George Gayno <George.Gayno@noaa.gov> Date: Mon Sep 16 17:25:14 2019 +0000 Vlab issues #65358 and #67852. Update gdas2gldas program to use the input grid mask - snow-free and non-glacial ice land areas - during interpolation. Change-Id: I61936020832c9a7608a9003212160c1eec598319 commit 78589469 Author: catherine.thomas <catherine.thomas@noaa.gov> Date: Mon Sep 16 11:10:37 2019 -0400 VLab Issue #65358 Modified anal and eobs config files with GPSRO parameters for L127. commit 2b2449bf Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Sep 15 14:35:47 2019 -0400 add netcdf option in config.post and rocoto/post.sh commit 7c9bb3dc Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Sep 14 13:15:46 2019 -0400 Add options to write 1) RESTART files with compression 2) forecast files in netcdf format with compression make sure LINKed file names in DATA and ROTDIR match each other modified: parm/config/config.fcst modified: scripts/exglobal_fcst_nemsfv3gfs.sh commit 13ea6ceb Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Sep 14 01:37:54 2019 +0000 modified: ../parm/config/config.fv3 Further tuned GWD coefficients. modified: checkout.sh: use temporary https://github.com/yangfanglin/UFS_UTILS commit 5d1fe312 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 13 23:46:56 2019 +0000 Vlab issues #65358 and #67852 Updates to new gdas2gldas program. Compile on Dell. Read in gldas restart file to set target grid mask. Change-Id: Id862601158715f0f41092bd2192573e02eb832b3 commit 4399d3d2 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Sep 13 13:01:30 2019 +0000 VLab Issue #65358 Only add GSI diagnostic file to tape archive list if diagnostic file exists commit 719688bc Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Sep 13 04:38:18 2019 +0000 VLab Issue #65358 1) update scripts to turn on all physics updates targeted for GFS.v16. 2) tuned coefficients for running ogwd and mountain block for 127-L GFS. 3) adjust computing resources in config.fv3 for 127-L GFS. 4) add to worflow the option to write out netcdf files with compression. See Jeff Whitaker's FV3 ticket https://vlab.ncep.noaa.gov/redmine/issues/68487 for the detail. 5) Create a UFS_UTIL branch "gfsv16" to set FNMSKH to T1534 land-sea masks for running CHGRES and surface cycle. Changes to be committed: modified: parm/config/config.base.emc.dyn modified: parm/config/config.base.emc.dyn.iau modified: parm/config/config.base.nco.static modified: parm/config/config.fcst modified: parm/config/config.fv3 modified: scripts/exglobal_fcst_nemsfv3gfs.sh modified: sorc/checkout.sh commit 31f91457 Merge: 23671eee 8214216f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Sep 13 02:56:08 2019 +0000 Merge branch 'feature/gfsv16' of gerrit:global-workflow into gfsv16fyang3 commit 8214216f Merge: b6ffd564 7c0cd1f2 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Sep 11 20:14:02 2019 +0000 VLab Issue #65358 Merge branch 'vrfy_metplus' at 7c0cd1f2 into feature/gfsv16 commit b6ffd564 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Sat Sep 7 14:58:25 2019 +0000 VLab Issue #65358 Add IAU_OFFSET=0 to DOIAU_coldstart section of scripts/exglobal_fcst_nemsfv3gfs.sh commit 7c8383db Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Sep 6 13:49:09 2019 +0000 VLab Issue #65358 Remove module_base.wcoss_cray since it is no longer needed. module_base.wcoss_c is used on Luna and Surge (WCOSS_C) commit 286b7afa Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Sep 5 23:36:49 2019 -0400 VLab Issue #65358 correct a namelist mistake in exglobal_fcst_nemsfv3gfs.sh. load yaml-cpp that is required by esmf commit eead3959 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Sep 5 20:18:23 2019 +0000 VLab Issue #65358 1. modified: sorc/checkout.sh as a temporary resolution to check independent sub-modules of NEMSfv3gfs 2. modified: parm/config/config.fcst and modified: scripts/exglobal_fcst_nemsfv3gfs.sh to add an option to use Wyser 1996 cloud ice radius scheme. See FV3 Redmine issue https://vlab.ncep.noaa.gov/redmine/issues/68141 for the detail. commit af747496 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Thu Sep 5 18:59:49 2019 +0000 Update NEMS app version to a master commit Previously the checkout for the FV3-GSDCHEM-WW3 app temporarily pointed to an interim commit that included GSDCHEM 0.87 and used ESMF 8.0.0bs40+ to facilitate development while waiting for the app to merge a full update to master. That update has now been made to the app master, so the checkout commit is now updated to point to that new version. The new FV3-GSDCHEM-WW3 app commit updates to GSDCHEM 0.87 and ESMF 8.0.0bs47, and also updates the other components to recent development versions. Change-Id: I0318535aa7564b48567a6442cdda074007095c03 Refs: #58418 commit dbcf983d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Sep 4 17:43:47 2019 +0000 VLab Issue #65358 Update Theia and WCOSS module_base esmf module load to esmf/8.0.0bs47 (consistent with forecast model) commit 67390029 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Sep 4 12:24:29 2019 -0400 VLab Issue #65358 Further update config.fcst to turn off canopy heat storage (config.fcst) for Noah-MP. Including canopy heat storage does help improving the 500-hPa ACC but tends to increase the lower-troposphere cold biases. commit 96a27fc4 Merge: 6f7bf392 ede312e0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Sep 4 10:33:39 2019 -0400 Merge branch 'feature/gfsv16' of gerrit:global-workflow into feature/gfsv16 commit 6f7bf392 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Sep 4 10:31:54 2019 -0400 VLab Issue #65358 Update config.fcst to turn on canopy heat storage (config.fcst) along with Noah-MP commit ede312e0 Author: Xu.Li <Xu.Li@noaa.gov> Date: Tue Sep 3 19:01:59 2019 +0000 Vlab Issue: #67743, modify to aplly real SST climatology updates to NSST background over small water bodies commit c1ad18d7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Aug 31 15:27:27 2019 -0400 VLab Issue #65358 set in config.fcst hord=5 for both gfs and gdas cycle forecasts commit a90f50af Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Aug 31 13:05:06 2019 -0400 remove obsolote readme.txt commit ecd87d7d Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Aug 29 19:46:53 2019 +0000 Vlab issues #65358 and #67852 Baseline new program - tentatively called gdas2gldas - that will update GLDAS with tiled surface data from GDAS. Change-Id: I5f97b4665ec389f85fda1db7caef2425472855ca commit 3834dfb2 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Aug 28 18:25:31 2019 +0000 VLab Issue #65358 Update forecast model checkout to NEMSfv3gfs branch gfsv16_physupdt. commit 1677483c Merge: b41d8472 c68728b5 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Aug 28 18:00:20 2019 +0000 VLab Issue #65358 Merge branch develop at commit:c68728b5 into feature/gfsv16. commit b41d8472 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Aug 28 15:22:53 2019 +0000 VLab issue #65358 Undo MinMon changes committed at 6325027f given developer updates to DA_GFSv16 commit 659443c1 Author: catherine.thomas <catherine.thomas@noaa.gov> Date: Wed Aug 28 10:23:49 2019 -0400 VLab Issue #65358 Updated intel, impi, and esmf modules for Theia commit f0e4cf7d Merge: 06a217f1 f94a5a43 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Aug 28 12:57:32 2019 +0000 VLab issue #65358 Merge branch 'develop' at f94a5a43 into feature/gfsv16. commit 23671eee Merge: ab07a77c 06a217f1 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Aug 27 22:53:19 2019 -0400 Merge branch 'feature/gfsv16' of gerrit:global-workflow into gfsv16fyang3 commit 06a217f1 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Aug 26 14:51:27 2019 +0000 VLab issue #65358 resolve Bug #67573 in feature/gfsv16: correct typo in firstcyc queue_arch defintion on non-slurm platforms commit 6325027f Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Aug 26 14:43:03 2019 +0000 VLab issue #65358 Update MinMon paths for development parallels; update WCOSS_D Fit2Obs to process netCDF files commit 57f74c84 Author: Walter Kolczynski <Walter.Kolczynski@noaa.gov> Date: Fri Aug 23 16:34:57 2019 +0000 Update UFS_utils version to work with GEFS The GEFS init system requires changes to global_chgres_driver.sh that are not present in v1.0.0. The UFS_utils version is updated to the current tip of the develop branch, which includes the necessary changes. Change-Id: I097b16342ca081e867786410a6ac9916fd5576fb Refs: #58418 commit ab07a77c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Aug 18 12:51:30 2019 +0000 remove outdated readme.txt commit 24bcacb6 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Aug 18 03:55:36 2019 +0000 add back checkout.sh commit 2d33c2f6 Merge: 8a7d50ef 4222fbf4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Aug 18 03:46:57 2019 +0000 update to feature/gfsv16 commit 4222fbf4 Merge: 90000d08 7448544c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Aug 13 10:09:01 2019 +0000 VLab issue #65358 Merge branch 'develop' at 7448544c into feature/gfsv16. Brings in Theia bug fixes #66187. commit 6fddfaf8 Merge: 9fd2726d 9dc4c7a1 Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Mon Aug 12 18:55:36 2019 +0000 Merge branch 'develop' into lgan_fv3_ww3 Change-Id: I068787c69f6610fa6896af16775378286d3e948b commit 90000d08 Merge: 0e676894 9dc4c7a1 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Aug 9 12:49:26 2019 +0000 VLab issue #65358 Merge branch 'develop' at 9dc4c7a1 into feature/gfsv16. Brings in hotfix #67072 commit 0e676894 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Aug 8 14:56:43 2019 +0000 VLab issue #65358 Generalize ush/hpssarch_gen.sh to include restart files needed by IAU commit 9fd2726d Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Mon Aug 5 18:24:21 2019 +0000 Update FV3-GSDCHEM-WW3 version Updated the checkout script to fetch a newer commit of the FV3-GSDCHEM-WW3 app. This newer version uses ESMF v8.0.0bs42, updates GSDCHEM to 0.87, WW3 to an OMP-enabled version, and FV3 to the latest develop commit. Change-Id: I7c16511e2d5d183abd96371afd0d0b237e5349aa Refs: #58418, #62104 commit f123abb8 Merge: f4b47b5d dcfa5eee Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Wed Jul 31 18:31:17 2019 +0000 Merge remote-tracking branch 'origin/develop' into lgan_fv3_ww3 commit c9ffb656 Merge: 9c9e7416 dcfa5eee Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jul 23 17:10:02 2019 +0000 VLab issue #65358 Merge branch 'develop' at dcfa5eee into feature/gfsv16 commit f4b47b5d Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Jul 18 21:49:50 2019 +0000 Cleaning up esmf profiling parms commit 056c6cd1 Merge: 2bb5bacc 01b12587 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Jul 18 21:45:33 2019 +0000 Merge branch 'lgan_fv3_ww3' of gerrit:global-workflow into lgan_fv3_ww3 commit 2bb5bacc Author: Henrique Alves <henrique.alves@noaa.gov> Date: Thu Jul 18 21:45:23 2019 +0000 Branch lgan_fv3_ww3: changing exglobal_fcst to allow writing wave component restart files following number of daily cycles (gfs_cyc), and creating proper comout for wave restart files commit 9c9e7416 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jul 18 14:58:16 2019 +0000 VLab issue #65358 Replace IAU_DELTHRS with IAU_OFFSET to set iau_offset in model_configure commit 01b12587 Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Tue Jul 16 17:49:44 2019 +0000 Fix clean arguments for building fv3 The arguments used when building the FV3-GSDCHEM-WW3 app used named arguments, but the script expects arguments without names. Change-Id: Ibc98a4c883f4f28c361104d03e4b17fb070dc7f8 Refs: #58418 commit 1743914f Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jul 16 15:43:41 2019 +0000 VLab issue #65358 * jobs/rocoto/vrfy.sh - set RUN_ENVIR to devpara for fit2obs only * scripts/exglobal_fcst_nemsfv3gfs.sh - IAU related changes * sorc/checkout.sh - checkout NEMSfv3gfs tag gfs.v16_tag_v2.0.0; remove fix_l127 from ProdGSI checkout commit 7135cc11 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Jul 8 17:03:55 2019 +0000 Small bugfix on copying out_pnt for wave output commit 65c37204 Author: Henrique Alves <henrique.alves@noaa.gov> Date: Mon Jul 8 15:07:19 2019 +0000 Changes made to exglobal_fcst to streamline linking and copying IO from/to wave model component. commit 8588614f Merge: 222059b4 6ca55564 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Jul 5 14:40:02 2019 +0000 Redmine issue #65358 Merge branch 'master' at 6ca55564 into feature/gfsv16 * add safeguard to not execute select vrfy jobs when CDATE equals SDATE * remove five sorc/build*sh scripts since they are now built by build_ufs_utils.sh commit 222059b4 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Sat Jun 29 22:37:25 2019 +0000 Redmine issue #65358 Mistakenly removed ProdGSI checkout DA_GFSv16 at 413d08ba. Restore DA_GFSv16 checkout with this commit. commit 413d08ba Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Sat Jun 29 21:16:48 2019 +0000 Redmine issue #65358 Update fv3gfs model to gfs.v16_preCCPP_20190610_v1.0.1 in sorc/checkout.sh commit 8a7d50ef Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Jun 29 19:11:19 2019 +0000 update model tag to gfs.v16_preCCPP_20190610_v1.0.1, in which io/FV3GFS_io.F90 was upfdate to restore warm-restart reproducibility capability commit 02704a3f Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Fri Jun 28 16:21:46 2019 +0000 Remove CDUMP requirement to use wave coupling Previously, the needed operations for wave coupling were only completed if CDUMP="gfs", even if cplwav=".true.". The GEFS uses a CDUMP="gdas", so this requirement had to be removed for the GEFS to operate correctly. Change-Id: I50964a7fc064f439b6c879fb199d910b3f7eadfc Refs: #58418 commit 4d8f71e6 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Jun 28 13:50:58 2019 +0000 Redmine issue #65358 Remove sorc/gettrk.fd and gettrk references in sorc/link_fv3gfs.sh. commit a3033a05 Merge: 6cfec865 6ca55564 Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Thu Jun 27 19:38:01 2019 +0000 Merge branch 'master' into lgan_fv3_ww3 Change-Id: I31ee2e1a55de3db34de2dbcb029224729c3c9074 commit a558e4a0 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 27 19:21:08 2019 +0000 Redmine issue #65358 update checkout.sh to check out GFS v16 DA development branch, DA_GFSv16 commit 6cfec865 Author: Walter.Kolczynski <Walter.Kolczynski@noaa.gov> Date: Thu Jun 27 19:15:50 2019 +0000 Update checkout script to get combined FV3-WW3-GSDCHEM app Replaces the FV3-only checkout with one that clones the combined FV3-WW3-GSDCHEM app, which can be run in any combination of those components. This unified app is required to run coupled forecasts. The app will build correctly in the normal way using build_fv3.sh (and build_all.sh). Post is also reverted to the mainline project rather than the gtg version which has more restricted access. NOTES ON APP VERSION: 1) App does not build successfully on WCOSS-Cray due to a module dependency issue that will be sorted out later. 2) As committed, the WW3 build requires a path of 79 characters or less. This will be addressed in a future NEMS commit. For now, you can fix this manually by updating L19 of fv3gfs.fd/NEMS/src/incmake/component_WW3.mk to a larger number before building. Change-Id: I6c6d000650dc4ee8b2bbc9997195c3dfa2690520 Refs: #58418 commit a682a673 Author: catherine.thomas <catherine.thomas@noaa.gov> Date: Wed Jun 26 11:16:05 2019 -0400 Redmine Issue #65358 Bugfix for jobs/rocoto/getic.sh. The date IF statement to handle pre-nemsio analysis files should use "-ge" instead of "-gt". commit 368141ca Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 26 13:45:22 2019 +0000 merge parm/config/config.fcst (ae08fe77) and sorc/checkout.sh (5bd7d817) from gfsv16fyang3 to feature/gfsv16. refs #65358 commit 5bd7d817 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 26 02:48:38 2019 +0000 use model branch gfs.v16_preCCPP_20190610_v1.0.0 which contains Helin's fix to FV3GFS_io.F90 commit ae08fe77 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 26 00:08:26 2019 +0000 change lheatstrg=T if lsm=1 and lheatstrg=F if lsm=2 commit 027af835 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jun 25 21:50:59 2019 +0000 refs #65358 merge scripts/exglobal_fcst_nemsfv3gfs.sh from gfsv16fyang3 at 57a51f8c to feature/gfsv16 commit 513eb3a9 Merge: 57a51f8c 0637ec7a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 25 20:05:02 2019 +0000 Merge branch 'feature/gfsv16' of gerrit:global-workflow into gfsv16fyang3 commit 57a51f8c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 25 20:03:58 2019 +0000 se default optveg=1 in exglobal_fcst_nemsfv3gfs.sh to turn off dynamic vegetation commit 0637ec7a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jun 25 18:28:45 2019 +0000 feature/gfsv16: add link to redmine issue refs #65358 Commit the following changes to checkout.sh: * add "-e" option to trap execution errors * remove ProdGSI branch EXP-locfix-io checout (use master) * remove commented out lines commit e5787870 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 25 17:59:51 2019 +0000 update exglobal_fcst_nemsfv3gfs.sh to pass landice from config.fcst; set lheatstrg=F if lsm=2 commit 2550fafc Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 25 03:32:20 2019 +0000 change default vaule of TKE in all field_table for sa-tke-edmf pbl scheme from 1.0E30 to 0.0. Otherwise, the model segfaults for warm restart. Update config.fcst to turn on sa-tke-edmf as default commit 19bf5fdc Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 25 03:21:01 2019 +0000 update scripts/exgfs_nawips.sh.ecf to add more output for WPC -- a fix from gfs.v15.1 after implementation commit 6c14ce46 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Jun 16 18:08:07 2019 +0000 change lheatstrg=T commit 39476f9b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Jun 16 17:58:33 2019 +0000 set default satmedmf=F in config.fcst. Model segfault with satmedmf=T for warm restart commit 5a13af01 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 14 05:44:06 2019 +0000 update module_base.theia, loading esmf/8.0.0bs21 needs module impi/5.1.2.109 commit 0e70011d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 13 04:52:50 2019 +0000 update config.fcst for running model with sa-tke-edmf pbl scheme commit c93e259b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 13 04:46:31 2019 +0000 add field_table_gfdl_satmedmf field_table_thompson_satmedmf field_table_wsm6_satmedmf field_table_zhaocarr_satmedmf for running the model with prognostic subgrid scale turbulent kinetic energy in sa-tke-edmf commit fecff06e Merge: 94614d3f 149a95e3 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 12 19:49:20 2019 +0000 Merge branch 'master-v16' of gerrit:global-workflow into gfsv16fyang3 commit 94614d3f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 12 19:48:43 2019 +0000 update workflow to include new physics options: radiation, NoahMP, sa-TKEEDMF and UGWP commit 149a95e3 Author: Lin.Gan <lin.gan@noaa.gov> Date: Wed Jun 12 16:16:20 2019 +0000 Merge nemsio_chgdate change redmine #64864 commit 77f8b292 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Jun 6 14:10:03 2019 +0000 Add missing line in config.fv3 commit 29295e75 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Jun 6 13:35:18 2019 +0000 Apply changes from rev 2fd3204c60b8ed8282ea0dc96f19f6aa24e27f7f and 5518e751d9c6105795e958a3c02175bf1aaf2dd5 commit 1248a869 Merge: 5a4da48e 55f4cc28 Author: Lin.Gan <lin.gan@noaa.gov> Date: Wed Jun 5 20:23:30 2019 +0000 Merge branch 'feature/iau' into master-v16 Merge feature/iau into master-v16 to take care of vlab issue: 64420 - Add optional 4DIAU to global-workflow Rev. merge 2fd3204c - merge gfsv16fyang2 into feature/iau Rev. merge 5518e751 - update checkout.sh to use EMC_post:master commit 5a4da48e Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu May 30 13:43:49 2019 +0000 Remove extra ufs_utils related scripts from ush commit beea5bf7 Author: Lin.Gan <lin.gan@noaa.gov> Date: Wed May 29 15:32:46 2019 +0000 Create FV3 GFS v16 master commit 55f4cc28 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 28 20:50:57 2019 +0000 Correct logic for historical ozinfo files. Add correct logic to config.anal.iau commit 4e8e0597 Merge: 751c6dd6 d919db63 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 24 20:36:49 2019 +0000 Merge branch d919db63 'master' into feature/iau commit 751c6dd6 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu May 23 12:51:23 2019 +0000 Add logic to config.anal to set OZINFO for retrospective parallels commit 4c846c71 Merge: f671b8b2 219fe342 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed May 22 13:26:15 2019 +0000 Merge branch 'gfsv16fyang' into feature/iau commit f671b8b2 Merge: 0fb73681 2acb5d31 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 21 13:55:22 2019 +0000 Merge 2acb5d31 master into feature/iau commit 219fe342 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri May 17 16:23:22 2019 +0000 update post.sh to check if master file for a particular forecast hour exists, then not keep rerunning for this hours when POST job is resubmitted. This is useful for running extended long forecasts commit 0fb73681 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon May 13 18:10:02 2019 +0000 Add DA executables to link_fv3gfs.sh commit b083d356 Merge: b46d0166 475967bc Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 13 02:54:19 2019 +0000 Merge branch 'master' of gerrit:global-workflow into gfsv16fyang Master was updated for using SLURM instead of MOAB job scheduler on Theia/Jet commit b46d0166 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 13 02:44:24 2019 +0000 Changes to be committed: modified: ../../jobs/rocoto/arch.sh add an option SAVEFCSTNEMSIO. if SAVEFCSTNEMSIO=NO, nemsio files are not archived to HPSS save online grib2 1-deg pgb files instead of grib1 1-deg files modified: ../../jobs/rocoto/vrfy.sh save online grib2 0.2-deg pgb files instead of grib1 0.2-deg files modified: ../../scripts/exglobal_fcst_nemsfv3gfs.sh set warm_restart=.true. if RERUN=YES for forecast-only experiment. Otherwise, the model fails to restart as it keeps looking for gfs_cntrl.nc for cold start cases. modified: ../../sorc/checkout.sh checkout UPP branch gfsv16_fyang for processing 127-L GFS commit db173335 Merge: c71cefaa 475967bc Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sat May 11 19:03:50 2019 +0000 Merge branch 'master' into feature/iau commit c71cefaa Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Wed May 8 02:08:59 2019 +0000 changes to enable slurm from slurm_beta_sync branch commit 9af1480d Author: lin.gan <lin.gan@noaa.gov> Date: Thu May 2 17:55:16 2019 +0000 Update resource to use dynamically calculated lowres on Theia include expdir commit ced016bb Author: lin.gan <lin.gan@noaa.gov> Date: Thu May 2 17:50:27 2019 +0000 Update resource to use dynamically calculated lowres on Theia commit 76f877c5 Author: lin.gan <lin.gan@noaa.gov> Date: Wed May 1 19:03:13 2019 +0000 Coupled ww3 tested with FV3 GFS forecast certified commit 56c686d0 Author: lin.gan <lin.gan@noaa.gov> Date: Wed May 1 14:06:18 2019 +0000 Testing include ICE data commit c0afa1b1 Author: Catherine Thomas <Catherine.Thomas@noaa.gov> Date: Wed May 1 13:50:14 2019 +0000 VLab Issue #60800, feature/iau (C Thomas): Made vcoord more flexible in gaussian_sfcanl. commit ebbf3c09 Author: Jeffrey.S.Whitaker <Jeffrey.S.Whitaker@noaa.gov> Date: Tue Apr 30 11:54:03 2019 -0400 back out some changes from L127_updates merge commit 06441ca0 Merge: ce2298dd b439bc7f Author: Jeffrey.S.Whitaker <Jeffrey.S.Whitaker@noaa.gov> Date: Tue Apr 30 11:13:39 2019 -0400 Merge remote-tracking branch 'origin/L127_updates' into feature/iau commit ce2298dd Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Mon Apr 29 18:40:02 2019 +0000 don't try to archive abias files if lobsdiag_forenkf = true commit 199e61c3 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Tue Apr 23 21:33:57 2019 +0000 add missing FNTSFC definition commit eeb6dd7f Merge: c7d0d246 8619f479 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Tue Apr 23 20:17:01 2019 +0000 Merge branch 'master' into feature/iau commit b439bc7f Author: Catherine Thomas <Catherine.Thomas@noaa.gov> Date: Mon Apr 22 16:36:10 2019 +0000 VLab Issue #60800 (L127_updates): Removed references to *C hyblev file. commit c24de7af Author: lin.gan <lin.gan@noaa.gov> Date: Mon Apr 22 14:15:17 2019 +0000 First try see email for record commit e789501c Author: lin.gan <lin.gan@noaa.gov> Date: Mon Apr 22 14:12:40 2019 +0000 First try see email for record commit c7d0d246 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sat Apr 20 00:58:10 2019 +0000 update commit fa338549 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sat Apr 20 00:57:03 2019 +0000 add more skeb namelist parameters commit e4a085bb Merge: d8e19fa6 82505618 Author: Catherine Thomas <Catherine.Thomas@noaa.gov> Date: Thu Apr 18 18:36:19 2019 +0000 L127_updates: Merge master commit f4296d5a Merge: b0f2a5ef 193f8837 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Wed Apr 17 22:19:19 2019 +0000 Merge branch 'master' into feature/iau commit b0f2a5ef Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Wed Apr 17 15:00:57 2019 +0000 update for IAU commit 5f2add79 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sun Apr 14 17:53:42 2019 +0000 update commit 84377670 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sun Apr 14 17:51:40 2019 +0000 update commit 62d02250 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sun Apr 14 17:50:18 2019 +0000 update commit 67520861 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sun Apr 14 17:47:27 2019 +0000 update commit ba4d815e Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sun Apr 14 17:45:54 2019 +0000 update commit 1a3fb978 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sun Apr 14 17:44:20 2019 +0000 new file commit d28e57d8 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sun Apr 14 17:42:48 2019 +0000 add output_1st_timestep so it works with NEMSFV3gfs master commit 1068601b Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sun Apr 14 17:37:26 2019 +0000 update commit 00240bfe Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Mon Apr 8 19:38:17 2019 +0000 update commit b4fcf4d8 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sun Apr 7 12:39:52 2019 +0000 turn on netcdf diag files commit 46b94eae Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Thu Apr 4 19:02:07 2019 +0000 config for IAU commit ae727bef Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Thu Apr 4 03:50:12 2019 +0000 run eobs at both gfs and gdas commit 2490ecdb Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Thu Apr 4 03:47:11 2019 +0000 update to run EnKF for gfs and gdas commit 8cb5d679 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Tue Apr 2 16:19:07 2019 +0000 add parameters back in atmos_model_nml commit ca2f9c56 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Apr 2 14:41:05 2019 +0000 update gsi tag from fv3da.v1.0.42 to fv3da.v1.0.43 to remove a dead link in Ozomon commit a6927f43 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Tue Apr 2 03:30:18 2019 +0000 update fv3gfs to 1.0.18 commit 06029ac8 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Tue Apr 2 03:29:51 2019 +0000 more bugfixes commit dbad0c88 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Apr 2 00:57:27 2019 +0000 update POC for DA in release note commit f8f108f4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Apr 2 00:46:18 2019 +0000 merge NCO's back to q2fy19_nco branch. Update release notes commit 602db4a6 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Mon Apr 1 02:16:17 2019 +0000 fix bug introduced into non-iau warm start forecasts commit 6eac887a Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sun Mar 31 14:54:03 2019 +0000 update commit f256a51a Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sun Mar 31 13:22:10 2019 +0000 more bug fixes commit bde9520b Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sat Mar 30 23:22:07 2019 +0000 fix IAU cold start initial date in model_configure commit 22c89f93 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sat Mar 30 19:40:04 2019 +0000 update commit c403d981 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sat Mar 30 18:50:48 2019 +0000 fix typo commit 0b43f7df Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sat Mar 30 16:51:33 2019 +0000 don't change date if coldstart commit cbbb49fb Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Mar 29 21:18:02 2019 +0000 Update DA tag to fv3da.v1.0.42 commit 4786300b Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Fri Mar 29 15:55:17 2019 +0000 may restart interval for IAU 3 hours, so restarts written at beginning and middle of window commit 0c64c804 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Fri Mar 29 15:40:48 2019 +0000 make sure restarts at middle of window are saved when IAU is on commit 23a45dea Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Mar 29 14:30:17 2019 +0000 Update model tag to nemsfv3gfs_beta_v1.0.18 to 1) correct a bug in precip units in the computation of frozen precipitation flag (srflag), 2) write fields that are continuously accumulated in model integration in restart files so that after a restart their acummulated values can be read in. (FV3 Issue #61788) commit 4624e674 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Fri Mar 29 01:47:51 2019 +0000 updates for IAU commit 944d81a8 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Fri Mar 29 01:47:33 2019 +0000 update commit 1538b4f8 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Fri Mar 29 01:46:20 2019 +0000 use EXP-locfix and fix_l127 for gsi, and new tag for NEMSfv3gfs commit d9b55382 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Mar 28 20:46:52 2019 +0000 update release note commit abff7d1d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Mar 28 20:45:36 2019 +0000 replace current ecflow/def file swith NCO's copy commit 87183636 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Thu Mar 28 17:50:31 2019 +0000 params for IAU commit a0c7b84f Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Thu Mar 28 17:42:48 2019 +0000 update commit 836d5065 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Thu Mar 28 17:06:25 2019 +0000 fix model_configure so start date is previous analysis time when IAU is on. commit 40793165 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Thu Mar 28 15:15:43 2019 +0000 fix IAU commit 3f2dcce1 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Wed Mar 27 20:21:29 2019 +0000 testing iau commit dfd76c03 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Tue Mar 26 23:01:05 2019 +0000 use EXP-locfix branch for GSI commit 69c06ea4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Mar 26 02:25:15 2019 +0000 Squashed commit of the following from branch q2fy19_nco_rst Add restart capability of running GFS long forecast from the end or a failing point of last attempt. modified: jobs/JGLOBAL_FORECAST, parm/config/config.base.nco.static parm/config/config.fcst, and scripts/exglobal_fcst_nemsfv3gfs.sh. restart_interval_gfs is used to control the frequency of writing out restart ICs, which are saved under ROTDIR for emc parallels and NWGES for NCO production. exglobal_fcst_nemsfv3gfs.sh script has been modified to autimatically detect if the model should execute as a cold, or warm start, or as rerun. If it is a rerun, the script will look for saved ICs that is restart_interval_gfs hours back from the last ending point. use 8x24 instead of 12x16 layout in config.fv3 for C768 -- Matt Pyle indicated this will actually speed up a 16-day forecasts by about 2 minutes per his test update to model tag nemsfv3gfs_beta_v1.0.17 to address restart I/O issues #60879 commit e01d1df6 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Mar 25 23:16:05 2019 +0000 Update DA tag to fv3da.v1.0.41 (Q3FY19 GDAS observation upgrade) commit 5e49a47c Author: Rahul Mahajan <rahul.mahajan@noaa.gov> Date: Mon Mar 25 22:02:32 2019 +0000 add config.resources.C96 commit eefaf95e Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Mon Mar 25 12:37:48 2019 +0000 fix typo commit 5c5c1deb Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Mon Mar 25 02:41:00 2019 +0000 C96 LONA should be 190, not 192 (to match berror file) commit 41140624 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Mon Mar 25 02:40:42 2019 +0000 .f90, not .f commit 0fdc76ce Merge: c345a00d 8c563c17 Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sun Mar 24 17:10:55 2019 +0000 Merge branch 'feature/iau' of gerrit:global-workflow into feature/iau commit c345a00d Author: jswhit <Jeffrey.S.Whitaker@noaa.gov> Date: Sun Mar 24 17:10:36 2019 +0000 fix building of namelist, specification of cycle time commit 8c563c17 Author: Rahul Mahajan <rahul.mahajan@noaa.gov> Date: Fri Mar 22 02:52:36 2019 +0000 fix modules issue commit bbd6e5e8 Author: Rahul Mahajan <rahul.mahajan@noaa.gov> Date: Fri Mar 22 01:46:14 2019 +0000 fix file permissions commit 28187c8e Author: Rahul Mahajan <rahul.mahajan@noaa.gov> Date: Fri Mar 22 01:45:34 2019 +0000 bugfix in setup_expt.py commit b75a1d7f Author: Rahul Mahajan <rahul.mahajan@noaa.gov> Date: Thu Mar 21 21:22:06 2019 -0400 bugfix for DOIAU and DOAIU_ENKF Change-Id: Ie7e2c96773ceb59b7f9f4e7340b09a0210ccb1e4 commit d8e19fa6 Author: Catherine Thomas <Catherine.Thomas@noaa.gov> Date: Thu Mar 14 18:08:13 2019 +0000 VLab Issue #60800, L127_updates (C. Thomas): Added nlayers change for eobs/eomg steps in addition to anal. commit 5595fcca Author: Catherine Thomas <Catherine.Thomas@noaa.gov> Date: Wed Mar 13 13:29:28 2019 +0000 VLab Issue #60800, L127_updates (C. Thomas): Bug fix for config.ecen commit 89f14fd6 Author: Catherine Thomas <Catherine.Thomas@noaa.gov> Date: Tue Mar 12 13:08:45 2019 +0000 VLab Issue #60800, L127_updates (C. Thomas): Make global_chgres_driver more flexible to accept different SIGLEVEL commit 0535d189 Author: Catherine Thomas <Catherine.Thomas@noaa.gov> Date: Mon Mar 11 21:51:22 2019 +0000 VLab Issue #60800, L127_updates (C. Thomas): Fixed typo in config.fv3 commit e820ab2f Author: Rahul Mahajan <rahul.mahajan@noaa.gov> Date: Mon Mar 11 14:52:39 2019 +0000 add utility to change date and forecast hour in nemsio file. commit 326da617 Author: Rahul Mahajan <rahul.mahajan@noaa.gov> Date: Mon Mar 11 10:38:36 2019 -0400 set restart interval = 3 at start of IAU expt Change-Id: I937c7aa96ef6421c0270c31e906eda1d6e4bb840 commit 3d1f592f Merge: aafd573b 595d44c9 Author: Rahul Mahajan <rahul.mahajan@noaa.gov> Date: Fri Mar 8 16:17:00 2019 -0500 Merge branch 'master' of gerrit:global-workflow into feature/iau Change-Id: Ide0c4c5dc13314de8f0eb19554b5895fc3e24a2e commit aafd573b Author: Rahul Mahajan <rahul.mahajan@noaa.gov> Date: Fri Mar 8 16:16:40 2019 -0500 add IAU capability in the forecast script Change-Id: I024d73ba585ffb034f73e8207bbe036a712a51c2 commit aebf1557 Merge: 292ef67b 595d44c9 Author: Catherine Thomas <Catherine.Thomas@noaa.gov> Date: Fri Mar 8 17:48:26 2019 +0000 Merge branch 'master' into L127_updates Adding in new model changes from potential v15 implementation commit 292ef67b Author: Catherine Thomas <catherine.thomas@noaa.gov> Date: Thu Mar 7 18:19:44 2019 +0000 VLab Issue #60800, L127_updates (C Thomas): Change hyblev file for fits commit 61b9da08 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Mar 5 18:59:56 2019 +0000 minor updates to resources usages in config.vrfy, config.resources and config.post on computers other an Dell to be consistent with the master repository commit 21007eae Author: catherine.thomas <catherine.thomas@noaa.gov> Date: Mon Mar 4 09:44:10 2019 -0500 VLab Issue #60800, L127_updates (C. Thomas): Change GSI fix directory in checkout.sh for L127 commit b71c6b7e Author: Catherine Thomas <catherine.thomas@noaa.gov> Date: Thu Feb 28 19:33:07 2019 +0000 VLab Issue #60800 (L127_updates): Point to correct hyblev file in fix_am commit 7b4bc504 Author: Catherine Thomas <catherine.thomas@noaa.gov> Date: Thu Feb 28 18:52:05 2019 +0000 VLab Issue #60800 (L127_updates): Level dependent changes to config files commit d2b0c40f Author: Catherine Thomas <catherine.thomas@noaa.gov> Date: Thu Feb 28 18:24:48 2019 +0000 VLab Issue #60800: Allowed for externally specified SIGLEVEL file in ush/gaussian_sfcanl.sh
d9fb3a1e
Loading